RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 LTB4RQ15722 352 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 DESI1Q6ICB0 168 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 ZNF585AQ6P3V2 769 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 GPRIN3Q6ZVF9 776 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 PRR22Q8IZ63 422 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 KCNA7Q96RP8 456 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 ANGPTL4Q9BY76 406 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 QPCTLQ9NXS2 382 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 PSMC3IPQ9P2W1 217 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-209ENST00000474432 BOKQ9UMX3 212 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-209ENST00000474432 G3V2L1 256 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 GUCY1B2O75343 617 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 ERAL1O75616 437 aaKnown RBP17.02■□□□□ 0.32
COL7A1-209ENST00000474432 KRT6AP02538 564 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 KRT6BP04259 564 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 SHBGP04278 402 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 ABCB1P08183 1280 aaPredicted RBP17.02■□□□□ 0.32
COL7A1-209ENST00000474432 GSTA1P08263 222 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 CSNK2A2P19784 350 aaPredicted RBP17.02■□□□□ 0.32
COL7A1-209ENST00000474432 ABCD3P28288 659 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 ADH7P40394 386 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 CASP3P42574 277 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 KRT6CP48668 564 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 TRMT12Q53H54 448 aaKnown RBP17.02■□□□□ 0.32
COL7A1-209ENST00000474432 ACAD11Q709F0 780 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 LIX1LQ8IVB5 337 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 VWA5B2Q8N398 1253 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 ADCY4Q8NFM4 1077 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 METTL6Q8TCB7 284 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 DIO2Q92813 273 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 C14orf79Q96F83 325 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 APIPQ96GX9 242 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 SECISBP2Q96T21 854 aaKnown RBP17.02■□□□□ 0.32
COL7A1-209ENST00000474432 DOHHQ9BU89 302 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 UBQLN3Q9H347 655 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 LDAHQ9H6V9 325 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 TBK1Q9UHD2 729 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 MCM8Q9UJA3 840 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 TIMM22Q9Y584 194 aa17.02■□□□□ 0.32
COL7A1-209ENST00000474432 MED12Q93074 2177 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 CCDC168Q8NDH2 2452 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 A0A0G2JNJ9 132 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 GOLGA6L10A6NI86 522 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 FAM90A27PA6NNH2 459 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 ULK1O75385 1050 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 EMDP50402 254 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 FOXA1P55317 472 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 HMGCS1Q01581 520 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 LCP2Q13094 533 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 TBCELQ5QJ74 424 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 HLA-DQA1Q5Y7H0 255 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 B3GNT6Q6ZMB0 384 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 MEX3BQ6ZN04 569 aaKnown RBP17.01■□□□□ 0.31
COL7A1-209ENST00000474432 SEM1Q6ZVN7 128 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 SLC22A9Q8IVM8 553 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 NEIL3Q8TAT5 605 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 HGDQ93099 445 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 SARAFQ96BY9 339 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 KLHL29Q96CT2 875 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 JSRP1Q96MG2 331 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-209ENST00000474432 RILPQ96NA2 401 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 ITPAQ9BY32 194 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 BRINP2Q9C0B6 783 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 NMRK1Q9NWW6 199 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 Q9UFV3 132 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 ACAD8Q9UKU7 415 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 DLGAP4Q9Y2H0 992 aa17.01■□□□□ 0.31
COL7A1-209ENST00000474432 TEP1Q99973 2627 aaKnown RBP17.01■□□□□ 0.31
COL7A1-209ENST00000474432 SERTM1A2A2V5 107 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 FIGNL2A6NMB9 653 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 TP53I11O14683 189 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 WDR1O75083 606 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 ESRRBO95718 433 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 PROCP04070 461 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 IL3P08700 152 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 PCSK2P16519 638 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 DEKP35659 375 aaKnown RBP17■□□□□ 0.31
COL7A1-209ENST00000474432 PTGDSP41222 190 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 TRPC1P48995 793 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 PKNOX1P55347 436 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 MRPS35P82673 323 aaKnown RBP17■□□□□ 0.31
COL7A1-209ENST00000474432 NNATQ16517 81 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 PRSS53Q2L4Q9 553 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 ZNF628Q5EBL2 1059 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 C1orf185Q5T7R7 199 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 GALNT18Q6P9A2 607 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 SCIMPQ6UWF3 145 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 GBP7Q8N8V2 638 aaPredicted RBP17■□□□□ 0.31
COL7A1-209ENST00000474432 ZNF597Q96LX8 424 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 ANKRA2Q9H9E1 313 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 TNFRSF12AQ9NP84 129 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 SIRT5Q9NXA8 310 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 DCDC2Q9UHG0 476 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 PLLPQ9Y342 182 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 KIAA1549Q9HCM3 1950 aa17■□□□□ 0.31
COL7A1-209ENST00000474432 CAPN14A8MX76 684 aa16.99■□□□□ 0.31
COL7A1-209ENST00000474432 KDM4EB2RXH2 506 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-209ENST00000474432 PCDH7O60245 1069 aa16.99■□□□□ 0.31
COL7A1-209ENST00000474432 NME6O75414 186 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-209ENST00000474432 PPM1BO75688 479 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms