RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 BANPQ8N9N5 519 aa16.5■□□□□ 0.23
UPF3A-203ENST00000474056 EXOSC8Q96B26 276 aaKnown RBP16.5■□□□□ 0.23
UPF3A-203ENST00000474056 DMRTA2Q96SC8 542 aa16.5■□□□□ 0.23
UPF3A-203ENST00000474056 GATA5Q9BWX5 397 aaPredicted RBP16.5■□□□□ 0.23
UPF3A-203ENST00000474056 ITPAQ9BY32 194 aa16.5■□□□□ 0.23
UPF3A-203ENST00000474056 IQCGQ9H095 443 aaKnown RBP16.5■□□□□ 0.23
UPF3A-203ENST00000474056 NXF5Q9H1B4 397 aaKnown RBP16.5■□□□□ 0.23
UPF3A-203ENST00000474056 PFDN4Q9NQP4 134 aa16.5■□□□□ 0.23
UPF3A-203ENST00000474056 RYDENQ9NUL5 291 aaKnown RBP16.5■□□□□ 0.23
UPF3A-203ENST00000474056 SIRT5Q9NXA8 310 aa16.5■□□□□ 0.23
UPF3A-203ENST00000474056 BCAP29Q9UHQ4 241 aa16.5■□□□□ 0.23
UPF3A-203ENST00000474056 POLR3HQ9Y535 204 aaPredicted RBP16.5■□□□□ 0.23
UPF3A-203ENST00000474056 HRH3Q9Y5N1 445 aa16.5■□□□□ 0.23
UPF3A-203ENST00000474056 NPFFR2Q9Y5X5 522 aa16.5■□□□□ 0.23
UPF3A-203ENST00000474056 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.5■□□□□ 0.23
UPF3A-203ENST00000474056 CRYBG3Q68DQ2 2970 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 E9PLN8 166 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 IGHG3P01860 377 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 ANXA4P09525 319 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-203ENST00000474056 PCSK2P16519 638 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 KCNJ2P63252 427 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 ZNF763Q0D2J5 394 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 ART3Q13508 389 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 RPS6KA2Q15349 733 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 CDSNQ15517 529 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 NNATQ16517 81 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 BICRALQ6AI39 1079 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 CCDC116Q8IYX3 515 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 C17orf47Q8NEP4 570 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 OR52R1Q8NGF1 315 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 CDC26Q8NHZ8 85 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 CAVIN3Q969G5 261 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 FAM111AQ96PZ2 611 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 VKORC1Q9BQB6 163 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 CNIH4Q9P003 139 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 SLC17A7Q9P2U7 560 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 CFL2Q9Y281 166 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 PTGDR2Q9Y5Y4 395 aa16.49■□□□□ 0.23
UPF3A-203ENST00000474056 ATP6AP2A0A1C7CYW4 349 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 LRRC3CA6NJW4 275 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 NPIPA2E9PIF3 369 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 NPIPA3F8WFD2 350 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 TRIM13O60858 407 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 SPAG7O75391 227 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 ATP6AP2O75787 350 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 RFPL3SP0C7P2 107 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 UROSP10746 265 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 ABCD3P28288 659 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 SMSP52788 366 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 NRG3P56975 720 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 HEPACAMQ14CZ8 416 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 PRSS53Q2L4Q9 553 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 ZNF628Q5EBL2 1059 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 XKRXQ6PP77 449 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 PAOXQ6QHF9 649 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 TRIM46Q7Z4K8 759 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 OR9A2Q8NGT5 310 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 ZNF675Q8TD23 568 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 PHF10Q8WUB8 498 aaKnown RBP16.48■□□□□ 0.23
UPF3A-203ENST00000474056 DIO2Q92813 273 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 MECRQ9BV79 373 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 ROPN1BQ9BZX4 212 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-203ENST00000474056 ZNF703Q9H7S9 590 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-203ENST00000474056 ANKRA2Q9H9E1 313 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 ROPN1Q9HAT0 212 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-203ENST00000474056 ZFP64Q9NPA5 681 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 BOKQ9UMX3 212 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-203ENST00000474056 ENTPD4Q9Y227 616 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 FIS1Q9Y3D6 152 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 CCL27Q9Y4X3 112 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 NOTCH2Q04721 2471 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 MED12Q93074 2177 aa16.48■□□□□ 0.23
UPF3A-203ENST00000474056 CAPN14A8MX76 684 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 TP53I11O14683 189 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 RSL1D1O76021 490 aaKnown RBP16.47■□□□□ 0.23
UPF3A-203ENST00000474056 CREB1P16220 341 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 ALDH3A1P30838 453 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 GSTM5P46439 218 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 TMED10P49755 219 aaKnown RBP16.47■□□□□ 0.23
UPF3A-203ENST00000474056 EMDP50402 254 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 CEBPEQ15744 281 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 ERCC6LQ2NKX8 1250 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 EMC4Q5J8M3 183 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 SP5Q6BEB4 398 aaPredicted RBP16.47■□□□□ 0.23
UPF3A-203ENST00000474056 FAM71E1Q6IPT2 247 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 TRILQ7L0X0 811 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 EID3Q8N140 333 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 RPRMLQ8N4K4 120 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 MARVELD2Q8N4S9 558 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 SPPL2AQ8TCT8 520 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 KAT2AQ92830 837 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 JSRP1Q96MG2 331 aaPredicted RBP16.47■□□□□ 0.23
UPF3A-203ENST00000474056 SMC6Q96SB8 1091 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 DOHHQ9BU89 302 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 RRAGDQ9NQL2 400 aaPredicted RBP16.47■□□□□ 0.23
UPF3A-203ENST00000474056 SLC35C2Q9NQQ7 365 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 GIMAP4Q9NUV9 329 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 EHD3Q9NZN3 535 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 TNFRSF10DQ9UBN6 386 aa16.47■□□□□ 0.23
UPF3A-203ENST00000474056 KLF2Q9Y5W3 355 aaPredicted RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms