RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SIMC1Q8NDZ2 872 aa17.22■□□□□ 0.35
CCDC88B-206ENST00000473405 TM4SF18Q96CE8 201 aa17.22■□□□□ 0.35
CCDC88B-206ENST00000473405 SECISBP2Q96T21 854 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-206ENST00000473405 ANGPTL4Q9BY76 406 aa17.22■□□□□ 0.35
CCDC88B-206ENST00000473405 NXF5Q9H1B4 397 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-206ENST00000473405 MAT2BQ9NZL9 334 aa17.22■□□□□ 0.35
CCDC88B-206ENST00000473405 ZNF639Q9UID6 485 aa17.22■□□□□ 0.35
CCDC88B-206ENST00000473405 SNX6Q9UNH7 406 aa17.22■□□□□ 0.35
CCDC88B-206ENST00000473405 AKAP6Q13023 2319 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 NIPBLQ6KC79 2804 aaeCLIP17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 GOLGA6L10A6NI86 522 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 CAPN14A8MX76 684 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 GABRA1P14867 456 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 FEN1P39748 380 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 CASP3P42574 277 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 DLX5P56178 289 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 CLCQ05315 142 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 CRYZQ08257 329 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 EXOSC7Q15024 291 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 TESK1Q15569 626 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 NNATQ16517 81 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 ZNF678Q5SXM1 525 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 C6orf163Q5TEZ5 329 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 FAM111BQ6SJ93 734 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 TIFABQ6ZNK6 161 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 C1orf52Q8N6N3 182 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 KLHL29Q96CT2 875 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 TMEM237Q96Q45 408 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 ALKBH4Q9NXW9 302 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 TMEM216Q9P0N5 145 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 NFU1Q9UMS0 254 aa17.21■□□□□ 0.35
CCDC88B-206ENST00000473405 KDM4EB2RXH2 506 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 MANBAO00462 879 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 DLX3O60479 287 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 GUCY1B2O75343 617 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 ERAL1O75616 437 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 SNX4O95219 450 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 CBX7O95931 251 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 HPNP05981 417 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 ABCB1P08183 1280 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 NRG3P56975 720 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 MAP4K2Q12851 820 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 LTB4RQ15722 352 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 UNC50Q53HI1 259 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 RIPPLY2Q5TAB7 128 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 TMEM198Q66K66 360 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 FAM180BQ6P0A1 224 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 LIX1Q8N485 282 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 CDYL2Q8N8U2 506 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 ADCY4Q8NFM4 1077 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 CTHRC1Q96CG8 243 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 CNRIP1Q96F85 164 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 ZNF681Q96N22 645 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 GNRHR2Q96P88 292 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 ZNF382Q96SR6 550 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 ITPAQ9BY32 194 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 BRINP2Q9C0B6 783 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 KCNN3Q9UGI6 736 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 ITGB1BP2Q9UKP3 347 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 C15orf41Q9Y2V0 281 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 MED13LQ71F56 2210 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 DOCK7Q96N67 2140 aa17.2■□□□□ 0.34
CCDC88B-206ENST00000473405 C15orf38-AP3S2A0A0A6YYH1 394 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 PPM1BO75688 479 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 CHN1P15882 459 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 CSNK2A2P19784 350 aaPredicted RBP17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 CDK9P50750 372 aaKnown RBP17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 RASA2Q15283 850 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 SLC25A35Q3KQZ1 300 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 ACSF3Q4G176 576 aaPredicted RBP17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 TEX35Q5T0J7 233 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 DESI1Q6ICB0 168 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 NAXEQ8NCW5 288 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 MTBPQ96DY7 904 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 ACPTQ9BZG2 426 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 HEY2Q9UBP5 337 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 VPS29Q9UBQ0 182 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 PLLPQ9Y342 182 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 L3MBTL1Q9Y468 752 aa17.19■□□□□ 0.34
CCDC88B-206ENST00000473405 FAM47E-STBD1D6RA91 191 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 RIPK2O43353 540 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 SUPT7LO94864 414 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 HSD3B1P14060 373 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 HSD3B2P26439 372 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 DEKP35659 375 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 MASP1P48740 699 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 EMDP50402 254 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 WNT3P56703 355 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 TRA2BP62995 288 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 RAE1P78406 368 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 MRPS35P82673 323 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 CSTF3Q12996 717 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 TRMT12Q53H54 448 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 DCST1Q5T197 706 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 TMEM81Q6P7N7 255 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 PACS2Q86VP3 889 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 LCA5Q86VQ0 697 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 CLYBLQ8N0X4 340 aa17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 RELL2Q8NC24 303 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-206ENST00000473405 HGDQ93099 445 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms