RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 CNTFP26441 200 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 DNAJA1P31689 397 aaKnown RBP18.08■□□□□ 0.48
COL9A3-210ENST00000472880 CASP3P42574 277 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 KIR2DL3P43628 341 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 ASCL1P50553 236 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 SF3B4Q15427 424 aaKnown RBP eCLIP18.08■□□□□ 0.484e-7■■■□□ 16.7
COL9A3-210ENST00000472880 NNATQ16517 81 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 RPS27LQ71UM5 84 aaKnown RBP18.08■□□□□ 0.48
COL9A3-210ENST00000472880 CTAGE4Q8IX94 777 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 RELL2Q8NC24 303 aaPredicted RBP18.08■□□□□ 0.48
COL9A3-210ENST00000472880 NAXEQ8NCW5 288 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 TNIP2Q8NFZ5 429 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 SELENOMQ8WWX9 145 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 KLHL29Q96CT2 875 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 HSPBAP1Q96EW2 488 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 TMEM41AQ96HV5 264 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 GNRHR2Q96P88 292 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 FMO2Q99518 471 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 PRDM14Q9GZV8 571 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 NXF5Q9H1B4 397 aaKnown RBP18.08■□□□□ 0.48
COL9A3-210ENST00000472880 UBQLN3Q9H347 655 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 METTL7AQ9H8H3 244 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 FARSBQ9NSD9 589 aaKnown RBP18.08■□□□□ 0.48
COL9A3-210ENST00000472880 BCAP29Q9UHQ4 241 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 SNX6Q9UNH7 406 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 CAMK2AQ9UQM7 478 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 DTX4Q9Y2E6 619 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 SLC6A5Q9Y345 797 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 NINQ8N4C6 2090 aa18.08■□□□□ 0.48
COL9A3-210ENST00000472880 TRIM49D1C9J1S8 452 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 GNB5O14775 395 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 PDYNP01213 254 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 IL2RAP01589 272 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 ATP1B1P05026 303 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 CSNK2A2P19784 350 aaPredicted RBP18.07■□□□□ 0.48
COL9A3-210ENST00000472880 FEN1P39748 380 aaKnown RBP18.07■□□□□ 0.48
COL9A3-210ENST00000472880 WNT3P56703 355 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 SNTB1Q13884 538 aaKnown RBP18.07■□□□□ 0.48
COL9A3-210ENST00000472880 PRICKLE4Q2TBC4 344 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 FNDC7Q5VTL7 733 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 LETMD1Q6P1Q0 360 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 ZNF483Q8TF39 744 aaPredicted RBP18.07■□□□□ 0.48
COL9A3-210ENST00000472880 IFT81Q8WYA0 676 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 NRGNQ92686 78 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 FAIM2Q9BWQ8 316 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 ITPAQ9BY32 194 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 POLDIP3Q9BY77 421 aaKnown RBP18.07■□□□□ 0.48
COL9A3-210ENST00000472880 BRF2Q9HAW0 419 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 NMRK1Q9NWW6 199 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 MAT2BQ9NZL9 334 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 DMGDHQ9UI17 866 aaKnown RBP18.07■□□□□ 0.48
COL9A3-210ENST00000472880 PSME2Q9UL46 239 aa18.07■□□□□ 0.48
COL9A3-210ENST00000472880 A0A1B0GTL3 188 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 A8MT66 165 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 CTAG2O75638 210 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 PPM1BO75688 479 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 S1PR1P21453 382 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 CEACAM8P31997 349 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-210ENST00000472880 TIMP3P35625 211 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 ALDH9A1P49189 494 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 CDH13P55290 713 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 PLCXD2Q0VAA5 305 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 GALNT1Q10472 559 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-210ENST00000472880 MAP4K2Q12851 820 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 EXOSC7Q15024 291 aaKnown RBP18.06■□□□□ 0.48
COL9A3-210ENST00000472880 VASNQ6EMK4 673 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 FAM111BQ6SJ93 734 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 ANGPTL8Q6UXH0 198 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 MMP21Q8N119 569 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 OR1J4Q8NGS1 313 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 OSBPL11Q9BXB4 747 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 TRPS1Q9UHF7 1281 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 ZNF180Q9UJW8 692 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 CES1P1Q9UKY3 287 aa18.06■□□□□ 0.48
COL9A3-210ENST00000472880 KDM4EB2RXH2 506 aaPredicted RBP18.05■□□□□ 0.48
COL9A3-210ENST00000472880 SYT5O00445 386 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 ABCB1P08183 1280 aaPredicted RBP18.05■□□□□ 0.48
COL9A3-210ENST00000472880 NAGAP17050 411 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 TSPAN8P19075 237 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 GCKP35557 465 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 FLYWCH1Q4VC44 716 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 GLE1Q53GS7 698 aaKnown RBP18.05■□□□□ 0.48
COL9A3-210ENST00000472880 EIPR1Q53HC9 387 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 NHSL2Q5HYW2 709 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 WIPI1Q5MNZ9 446 aaPredicted RBP18.05■□□□□ 0.48
COL9A3-210ENST00000472880 NSUN5P2Q63ZY6 315 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 TIGD3Q6B0B8 471 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 C1orf52Q8N6N3 182 aaKnown RBP18.05■□□□□ 0.48
COL9A3-210ENST00000472880 UHMK1Q8TAS1 419 aaKnown RBP18.05■□□□□ 0.48
COL9A3-210ENST00000472880 DCAKDQ8WVC6 231 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 RNASE6Q93091 150 aaKnown RBP18.05■□□□□ 0.48
COL9A3-210ENST00000472880 OMA1Q96E52 524 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 LCORQ96JN0 433 aaPredicted RBP18.05■□□□□ 0.48
COL9A3-210ENST00000472880 TRIB1Q96RU8 372 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 HBEGFQ99075 208 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 SH3GL2Q99962 352 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 GPATCH1Q9BRR8 931 aaKnown RBP18.05■□□□□ 0.48
COL9A3-210ENST00000472880 C1QTNF3Q9BXJ4 246 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 UGT2B28Q9BY64 529 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 CLEC4MQ9H2X3 399 aaPredicted RBP18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms