RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PON2Q15165 354 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 OR4F3Q6IEY1 312 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 SLC2A7Q6PXP3 512 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 FAM129CQ86XR2 697 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 DCBLD1Q8N8Z6 715 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 LRRC46Q96FV0 321 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 LRR1Q96L50 414 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 SMOXQ9NWM0 555 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 UBE2J1Q9Y385 318 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-209ENST00000472056 MEIOCA2RUB1 952 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 GAPDHSO14556 408 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-209ENST00000472056 TRAPPC2P0DI81 140 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 TRAPPC2BP0DI82 140 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 GGT1P19440 569 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 ARSJQ5FYB0 599 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-209ENST00000472056 POMZP3Q6PJE2 187 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 RETREG3Q86VR2 466 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 OR51G2Q8NGK0 314 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 BCO2Q9BYV7 579 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 FBXL3Q9UKT7 428 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 RICTORQ6R327 1708 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 APBB3O95704 486 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 PCGF2P35227 344 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 TAS2R30P59541 319 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 MAP2K5Q13163 448 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 PMS2P3Q13401 168 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 NCBP2-AS2Q69YL0 99 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 TICAM1Q8IUC6 712 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 FBXL18Q96ME1 805 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 HBEGFQ99075 208 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 NIPAL2Q9H841 368 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 VRTNQ9H8Y1 702 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 BOLA2-SMG1P6H3BVE0 249 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 SEPT4O43236 478 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 TGOLN2O43493 480 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 AHSGP02765 367 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 KDELR2P33947 212 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 GCGRP47871 477 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 PSMD8P48556 350 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 TAP2Q03519 686 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 NBPF12Q5TAG4 269 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-209ENST00000472056 STEAP4Q687X5 459 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 GPR142Q7Z601 462 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 KIAA0907Q7Z7F0 614 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-209ENST00000472056 SLC43A2Q8N370 569 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 AGPAT4Q9NRZ5 378 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 ASF1BQ9NVP2 202 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 ADAMTS6Q9UKP5 1117 aa12.73□□□□□ -0.37
COL6A3-209ENST00000472056 ZBTB7AO95365 584 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 BPIP17213 487 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 CD9P21926 228 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 TIA1P31483 386 aaKnown RBP eCLIP12.72□□□□□ -0.37
COL6A3-209ENST00000472056 CA5AP35218 305 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 ELP2Q6IA86 826 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 HIST2H3AQ71DI3 136 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 NANPQ8TBE9 248 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 POLDIP3Q9BY77 421 aaKnown RBP12.72□□□□□ -0.37
COL6A3-209ENST00000472056 ADAM18Q9Y3Q7 739 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 TTC24A2A3L6 582 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-209ENST00000472056 GGT3PA6NGU5 568 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 RNF225M0QZC1 329 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-209ENST00000472056 ARPC5O15511 151 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 GGT2P36268 569 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 FAM214AQ32MH5 1076 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 KCTD20Q7Z5Y7 419 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 OR2T11Q8NH01 316 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 TM9SF4Q92544 642 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 J3KR12 359 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 FNDC9Q8TBE3 224 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 ADAMTS14Q8WXS8 1223 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 RADILQ96JH8 1075 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 KCNIP1Q9NZI2 227 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 LILRB5O75023 590 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 TOXO94900 526 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 EGFP01133 1207 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 GDF10P55107 478 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 TBCEQ15813 527 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-209ENST00000472056 AWAT2Q6E213 333 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 LPCAT3Q6P1A2 487 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 GORASP2Q9H8Y8 452 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 C14orf119Q9NWQ9 140 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 DUS2Q9NX74 493 aaKnown RBP12.72□□□□□ -0.37
COL6A3-209ENST00000472056 ABRACLQ9P1F3 81 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 NIPSNAP2O75323 286 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 BMP1P13497 986 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 EVI2BP34910 448 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 KIAA1211LQ6NV74 962 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 C3orf58Q8NDZ4 430 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 ADAMTS16Q8TE57 1224 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 SAMD10Q9BYL1 202 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 EBF1Q9UH73 591 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 SPO11Q9Y5K1 396 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 RNF212BA8MTL3 300 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 STBD1O95210 358 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 H2BFMP0C1H6 154 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 SLAMF1Q13291 335 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 ZNF619Q8N2I2 560 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 TMEM248Q9NWD8 314 aa12.72□□□□□ -0.37
COL6A3-209ENST00000472056 ZFR2Q9UPR6 939 aaKnown RBP12.72□□□□□ -0.37
COL6A3-209ENST00000472056 ADAM12O43184 909 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms