RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 TREML1Q86YW5 311 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 OR2L13Q8N349 312 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 FDCSPQ8NFU4 85 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 OR4A15Q8NGL6 344 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 OR5AK3PQ8NH89 298 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 PSMA8Q8TAA3 256 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 SPDL1Q96EA4 605 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 CCDC115Q96NT0 180 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 CCDC106Q9BWC9 280 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 LHPPQ9H008 270 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 OR10A5Q9H207 317 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 COPS7AQ9UBW8 275 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 BCAP29Q9UHQ4 241 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 ARL2BPQ9Y2Y0 163 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 A0A087WV62 115 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 CCDC154A6NI56 674 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 A8MUI8 341 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 CFLARO15519 480 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 DYRK3O43781 588 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 CEACAM4O75871 244 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 PSMG1O95456 288 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 ICAM2P13598 275 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 DDX5P17844 614 aaKnown RBP13.72□□□□□ -0.21
COL9A3-209ENST00000469852 EMDP50402 254 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 KCNK10P57789 538 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 RNF4P78317 190 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 EBPQ15125 230 aaKnown RBP13.72□□□□□ -0.21
COL9A3-209ENST00000469852 GTDC1Q4AE62 458 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 PAGE3Q5JUK9 113 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 C6orf163Q5TEZ5 329 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 ANXA8L1Q5VT79 327 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 H3F3CQ6NXT2 135 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 DNAJC14Q6Y2X3 702 aaPredicted RBP13.72□□□□□ -0.21
COL9A3-209ENST00000469852 HSDL2Q6YN16 418 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 WDR53Q7Z5U6 358 aaPredicted RBP13.72□□□□□ -0.21
COL9A3-209ENST00000469852 NATD1Q8N6N6 113 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 C16orf52Q8NHV5 167 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 FAM120BQ96EK7 910 aaKnown RBP13.72□□□□□ -0.21
COL9A3-209ENST00000469852 GIMAP5Q96F15 307 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 ART5Q96L15 291 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 ZNF552Q9H707 407 aaPredicted RBP13.72□□□□□ -0.21
COL9A3-209ENST00000469852 ZBTB20Q9HC78 741 aaPredicted RBP13.72□□□□□ -0.21
COL9A3-209ENST00000469852 GPR83Q9NYM4 423 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 TAS2R9Q9NYW1 312 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 PTGFRNQ9P2B2 879 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 BTNL2Q9UIR0 455 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 C19orf53Q9UNZ5 99 aaPredicted RBP13.72□□□□□ -0.21
COL9A3-209ENST00000469852 SNX8Q9Y5X2 465 aa13.72□□□□□ -0.21
COL9A3-209ENST00000469852 K7EM74 188 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 ZNF354AO60765 605 aaPredicted RBP13.71□□□□□ -0.21
COL9A3-209ENST00000469852 GSNP06396 782 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 PTPN6P29350 595 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 SOAT1P35610 550 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 SOX11P35716 441 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 POLE2P56282 527 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 MYBPC3Q14896 1274 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 TCTN3Q6NUS6 607 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 RETREG3Q86VR2 466 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 OR7G1Q8NGA0 311 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 GOT1L1Q8NHS2 421 aaPredicted RBP13.71□□□□□ -0.21
COL9A3-209ENST00000469852 BCAS4Q8TDM0 211 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 TTC9Q92623 222 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 GTF2H4Q92759 462 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 GAL3ST4Q96RP7 486 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 ITPAQ9BY32 194 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 DEFB126Q9BYW3 111 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 WWTR1Q9GZV5 400 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 DDX18Q9NVP1 670 aaKnown RBP13.71□□□□□ -0.21
COL9A3-209ENST00000469852 TMEM45AQ9NWC5 275 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 SLAMF8Q9P0V8 285 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 NTMQ9P121 344 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 CAPN7Q9Y6W3 813 aa13.71□□□□□ -0.21
COL9A3-209ENST00000469852 BSNQ9UPA5 3926 aa13.71□□□□□ -0.22
COL9A3-209ENST00000469852 A0A1W2PP18 115 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 WWP2O00308 870 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 FBP2O00757 339 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 EMC8O43402 210 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 PRAMEF2O60811 474 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 CCDC22O60826 627 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 ZFAND5O76080 213 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 SLITRK5O94991 958 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 PDGFAP04085 211 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 ITGB2P05107 769 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 SNRPB2P08579 225 aaKnown RBP13.7□□□□□ -0.22
COL9A3-209ENST00000469852 IFI6P09912 130 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 HOXB9P17482 250 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-209ENST00000469852 CCT3P49368 545 aaKnown RBP13.7□□□□□ -0.22
COL9A3-209ENST00000469852 PRKAG1P54619 331 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 NNATQ16517 81 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 MAPKAPK3Q16644 382 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 GKAP1Q5VSY0 366 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-209ENST00000469852 JMJD6Q6NYC1 403 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-209ENST00000469852 NPSR1Q6W5P4 371 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 MSANTD1Q6ZTZ1 278 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 SZRD1Q7Z422 152 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 SNX32Q86XE0 403 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 POU5F2Q8N7G0 328 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 ANKS4BQ8N8V4 417 aa13.7□□□□□ -0.22
COL9A3-209ENST00000469852 ZNF441Q8N8Z8 693 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms