RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PPIL3Q9H2H8 161 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 DPEP2Q9H4A9 486 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 LYRM4Q9HD34 91 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC2A8Q9NY64 477 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 MIS18AQ9NYP9 233 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 PLEK2Q9NYT0 353 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 ADA2Q9NZK5 511 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 SIX4Q9UIU6 781 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 RAB23Q9ULC3 237 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 SPATA2Q9UM82 520 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 RPH3ALQ9UNE2 315 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 B3GNT3Q9Y2A9 372 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 PIGLQ9Y2B2 252 aa4.47□□□□□ -1.69
CCDC88A-210ENST00000468534 NEURL4Q96JN8 1562 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 DISP3Q9P2K9 1392 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 TMEM89A2RUT3 159 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 C9JVG2 144 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 CLDN4O14493 209 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ACOT8O14734 319 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 PSMD3O43242 534 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 LRCH4O75427 683 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 RPS6KA5O75582 802 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 RSL1D1O76021 490 aaKnown RBP4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 CBX6O95503 412 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 NFATC1O95644 943 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 FTH1P02794 183 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 IFNA6P05013 189 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 RFPL3SP0C7P2 107 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 OR2T7P0C7T2 308 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 SPP1P10451 314 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 IRF1P10914 325 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 PRPS1L1P21108 318 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ACKR3P25106 362 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ELAVL4P26378 380 aaKnown RBP4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 CRABP2P29373 138 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ACTR1BP42025 376 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 FMO5P49326 533 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 CEBPGP53567 150 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 TAS2R50P59544 299 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 IRX4P78413 519 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 RHAGQ02094 409 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 TLE3Q04726 772 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 FGL1Q08830 312 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 TSPAN31Q12999 210 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 SLAMF1Q13291 335 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 IL13RA2Q14627 380 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 EXT1Q16394 746 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 TATDN3Q17R31 274 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 TMEM44Q2T9K0 475 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 GOLGA7BQ2TAP0 167 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 POM121L1PQ3SYA9 428 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 FAM174BQ3ZCQ3 159 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 CDONQ4KMG0 1287 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ACTBL2Q562R1 376 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 LRRC73Q5JTD7 316 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 LRIF1Q5T3J3 769 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 C6orf183Q5T699 404 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 SERTAD4-AS1Q5TG53 156 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ASPHD1Q5U4P2 390 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 PYHIN1Q6K0P9 492 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 FAM122CQ6P4D5 195 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 PRSS57Q6UWY2 283 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 C16orf89Q6UX73 402 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 FAM151BQ6UXP7 276 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 CTU1Q7Z7A3 348 aaKnown RBP4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 TSPAN33Q86UF1 283 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC13A5Q86YT5 568 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 PLD3Q8IV08 490 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 MB21D2Q8IYB1 491 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF683Q8IZ20 524 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF786Q8N393 782 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 FBXO39Q8N4B4 442 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 TTC29Q8NA56 475 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 FBXL13Q8NEE6 735 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 PROKR2Q8NFJ6 384 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 PNPT1Q8TCS8 783 aaKnown RBP4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ADAMTS16Q8TE57 1224 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 CHPT1Q8WUD6 406 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 KCNJ9Q92806 393 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 MOAP1Q96BY2 351 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ASB9Q96DX5 294 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 OTUB1Q96FW1 271 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF274Q96GC6 653 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 FAR2Q96K12 515 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ATG101Q9BSB4 218 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 CCDC28BQ9BUN5 200 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 GTPBP2Q9BX10 602 aaKnown RBP4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 TEKT3Q9BXF9 490 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 DGCR6LQ9BY27 220 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 OR2B2Q9GZK3 357 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 TOLLIPQ9H0E2 274 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 EQTNQ9NQ60 294 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 PLCXD1Q9NUJ7 323 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF701Q9NV72 531 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 BABAM1Q9NWV8 329 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC17A7Q9P2U7 560 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 WARS2Q9UGM6 360 aaKnown RBP4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 LNPEPQ9UIQ6 1025 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 KCNJ14Q9UNX9 436 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 OR10H1Q9Y4A9 318 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms