RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TBC1D3IA0A087WXS9 549 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 TBC1D3EA0A087X179 549 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 TBC1D3KA0A087X1G2 549 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 TBC1D3FA6NER0 549 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-217ENST00000466159 AGAP5A6NIR3 686 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 TBC1D3LB9A6J9 549 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 LINC01565O15544 149 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 KIAA0513O60268 411 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 EML2O95834 649 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 TBC1D3HP0C7X1 549 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 MMP11P24347 488 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 KIR2DL1P43626 348 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-217ENST00000466159 KHKP50053 298 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 SNRPNP63162 240 aaKnown RBP8.43□□□□□ -1.06
SYNE1-217ENST00000466159 INAVAQ3KP66 663 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 ITPRIPL2Q3MIP1 535 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 GPAT3Q53EU6 434 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 TPRG1LQ5T0D9 272 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 TBC1D3GQ6DHY5 549 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 TBC1D3CQ6IPX1 549 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 PLEKHG7Q6ZR37 379 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 IQCHQ86VS3 1027 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 SLC22A16Q86VW1 577 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 TBC1D3Q8IZP1 549 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-217ENST00000466159 KBTBD8Q8NFY9 601 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 OR2L5Q8NG80 312 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 OR4E2Q8NGC2 313 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 OR4K5Q8NGD3 323 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 ZG16BQ96DA0 208 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 RAB11FIP5Q9BXF6 653 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 NXF2Q9GZY0 626 aaKnown RBP8.43□□□□□ -1.06
SYNE1-217ENST00000466159 EQTNQ9NQ60 294 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 TVP23BQ9NYZ1 205 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 APOBEC3BQ9UH17 382 aaKnown RBP8.43□□□□□ -1.06
SYNE1-217ENST00000466159 CES1P1Q9UKY3 287 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 SCN2AQ99250 2005 aa8.43□□□□□ -1.06
SYNE1-217ENST00000466159 A0A1W2PRQ8 180 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 ISM1B1AKI9 464 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 CCRL2O00421 344 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 PLRG1O43660 514 aaKnown RBP8.42□□□□□ -1.06
SYNE1-217ENST00000466159 PRKYO43930 277 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 GPX5O75715 221 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 LGI1O95970 557 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 PIPP12273 146 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-217ENST00000466159 SOX3P41225 446 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 SMIM11AP58511 58 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 SLC13A2Q13183 592 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 C19orf48Q6RUI8 117 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 FAM92BQ6ZTR7 304 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 NUDT18Q6ZVK8 323 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 SLC34A3Q8N130 599 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 BBS10Q8TAM1 723 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 KLHL6Q8WZ60 621 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 OPALINQ96PE5 141 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 RMI1Q9H9A7 625 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 BCL2L10Q9HD36 194 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 ZSCAN32Q9NX65 697 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 SLC9A8Q9Y2E8 581 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 USP34Q70CQ2 3546 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 TRBV23OR9-2A0A075B6M9 112 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 POM121BA6NF01 834 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 CACNB4O00305 520 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-217ENST00000466159 TBX1O43435 398 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 FRS3O43559 492 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 TLX2O43763 284 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-217ENST00000466159 ADAM23O75077 832 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 UPK1BO75841 260 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 NTN1O95631 604 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 ASGR2P07307 311 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 F3P13726 295 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 AK4P27144 223 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-217ENST00000466159 AHRP35869 848 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 MC3RP41968 323 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 MAN2A2P49641 1150 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 ADPRHP54922 357 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 CLDN2P57739 230 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 PPP2CBP62714 309 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 PPP2CAP67775 309 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 ZNF91Q05481 1191 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 SFSWAPQ12872 951 aaKnown RBP8.42□□□□□ -1.06
SYNE1-217ENST00000466159 TMEM196Q5HYL7 178 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 TMEM201Q5SNT2 666 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 ACSM5Q6NUN0 579 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 SLC48A1Q6P1K1 146 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 SYCE2Q6PIF2 218 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 PAQR6Q6TCH4 344 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 TMEM64Q6YI46 380 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 CADM3Q8N126 398 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 KCT2Q8NC54 265 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 MORN4Q8NDC4 146 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 OR8J1Q8NGP2 316 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 OR9A2Q8NGT5 310 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 TAPBPLQ9BX59 468 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 PBX4Q9BYU1 374 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 HHATLQ9HCP6 504 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 TBC1D29Q9UFV1 150 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 ENTPD4Q9Y227 616 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 CA5BQ9Y2D0 317 aa8.42□□□□□ -1.06
SYNE1-217ENST00000466159 LSM2Q9Y333 95 aaKnown RBP8.42□□□□□ -1.06
SYNE1-217ENST00000466159 EPOPA6NHQ4 379 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms