RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 TICAM1Q8IUC6 712 aa16■□□□□ 0.15
USP39-208ENST00000455732 DDIASQ8IXT1 998 aa16■□□□□ 0.15
USP39-208ENST00000455732 CPSF7Q8N684 471 aaKnown RBP16■□□□□ 0.15
USP39-208ENST00000455732 RELTQ969Z4 430 aa16■□□□□ 0.15
USP39-208ENST00000455732 TLCD1Q96CP7 247 aa16■□□□□ 0.15
USP39-208ENST00000455732 GPR137Q96N19 417 aa16■□□□□ 0.15
USP39-208ENST00000455732 TMBIM4Q9HC24 238 aa16■□□□□ 0.15
USP39-208ENST00000455732 KCNK9Q9NPC2 374 aa16■□□□□ 0.15
USP39-208ENST00000455732 MIEF1Q9NQG6 463 aa16■□□□□ 0.15
USP39-208ENST00000455732 PFDN4Q9NQP4 134 aa16■□□□□ 0.15
USP39-208ENST00000455732 EXO1Q9UQ84 846 aaKnown RBP16■□□□□ 0.15
USP39-208ENST00000455732 CACNA1DQ01668 2161 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 A0A1B0GUH1 482 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 A1L4Q6 167 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 WDR91A4D1P6 747 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 MYO1GB0I1T2 1018 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 SLITRK5O94991 958 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 HSPA4LO95757 839 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 CLDN1O95832 211 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 PCSK2P16519 638 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 SDC1P18827 310 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 GPX3P22352 226 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 TACR1P25103 407 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 MPIP34949 423 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 ABCE1P61221 599 aaKnown RBP15.99■□□□□ 0.15
USP39-208ENST00000455732 RPL38P63173 70 aaKnown RBP15.99■□□□□ 0.15
USP39-208ENST00000455732 RFTN2Q52LD8 501 aaPredicted RBP15.99■□□□□ 0.15
USP39-208ENST00000455732 KRTCAP3Q53RY4 240 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 C1QL3Q5VWW1 255 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 HLA-DQA1Q5Y7H0 255 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 HIST2H2BCQ6DN03 193 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 BNC2Q6ZN30 1099 aaPredicted RBP15.99■□□□□ 0.15
USP39-208ENST00000455732 CCDC116Q8IYX3 515 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 KIRREL3Q8IZU9 778 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 ADCY4Q8NFM4 1077 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 OR9A2Q8NGT5 310 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 CDC26Q8NHZ8 85 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 AGR3Q8TD06 166 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 PAQR8Q8TEZ7 354 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 PPP3R2Q96LZ3 170 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 DEPPQ9NTK1 212 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 PRODH2Q9UF12 536 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 HAO1Q9UJM8 370 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 NINQ8N4C6 2090 aa15.99■□□□□ 0.15
USP39-208ENST00000455732 CELSR2Q9HCU4 2923 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 TMEM120BA0PK00 339 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 PLOD3O60568 738 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 TBX19O60806 448 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 LYPLA1O75608 230 aaPredicted RBP15.98■□□□□ 0.15
USP39-208ENST00000455732 BCAS2O75934 225 aaPredicted RBP15.98■□□□□ 0.15
USP39-208ENST00000455732 PTGER1P34995 402 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 NR0B1P51843 470 aaKnown RBP15.98■□□□□ 0.15
USP39-208ENST00000455732 NTRK2Q16620 822 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 PRSS53Q2L4Q9 553 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.98■□□□□ 0.15
USP39-208ENST00000455732 TRMT12Q53H54 448 aaKnown RBP15.98■□□□□ 0.15
USP39-208ENST00000455732 FJX1Q86VR8 437 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 LURAP1LQ8IV03 231 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 FAM9CQ8IZT9 166 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 OR2M7Q8NG81 312 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 OR52R1Q8NGF1 315 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 ZBTB9Q96C00 473 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 EGLN2Q96KS0 407 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 BBS4Q96RK4 519 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 TSPAN10Q9H1Z9 355 aaPredicted RBP15.98■□□□□ 0.15
USP39-208ENST00000455732 SACM1LQ9NTJ5 587 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 DTX4Q9Y2E6 619 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.98■□□□□ 0.15
USP39-208ENST00000455732 ITPR2Q14571 2701 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 EXPH5Q8NEV8 1989 aa15.98■□□□□ 0.15
USP39-208ENST00000455732 CAPN14A8MX76 684 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 NPIPA5E9PKD4 350 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 ASNA1O43681 348 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 ITM2AO43736 263 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 P04436 131 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 IFI6P09912 130 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 CCL3P10147 92 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 CNR1P21554 472 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 BGNP21810 368 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 MAPK1P28482 360 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 NTSP30990 170 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 CA7P43166 264 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 ASMTP46597 345 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 TMED10P49755 219 aaKnown RBP15.97■□□□□ 0.15
USP39-208ENST00000455732 EMDP50402 254 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 PER3P56645 1201 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 NRG3P56975 720 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 GPR85P60893 370 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 MAGOHP61326 146 aaKnown RBP15.97■□□□□ 0.15
USP39-208ENST00000455732 DCAF7P61962 342 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 MRPS35P82673 323 aaKnown RBP15.97■□□□□ 0.15
USP39-208ENST00000455732 RBPJQ06330 500 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 PDE7AQ13946 482 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 EXOSC7Q15024 291 aaKnown RBP15.97■□□□□ 0.15
USP39-208ENST00000455732 GALNTL6Q49A17 601 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 ATP6AP1LQ52LC2 224 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 GK5Q6ZS86 529 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 MAMDC2Q7Z304 686 aaPredicted RBP15.97■□□□□ 0.15
USP39-208ENST00000455732 FBXW8Q8N3Y1 598 aa15.97■□□□□ 0.15
USP39-208ENST00000455732 ZNF781Q8N8C0 355 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms