RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 LAMP2P13473 410 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 L1CAMP32004 1257 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 GZMKP49863 264 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 KIAA0930Q6ICG6 404 aaPredicted RBP12.7□□□□□ -0.38
USP40-208ENST00000450966 RNF141Q8WVD5 230 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 AARSD1Q9BTE6 412 aaKnown RBP12.7□□□□□ -0.38
USP40-208ENST00000450966 BCO2Q9BYV7 579 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 GAR1Q9NY12 217 aaKnown RBP12.7□□□□□ -0.38
USP40-208ENST00000450966 A0A1W2PRB8 838 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 NRP1O14786 923 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 KCNK2O95069 426 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 TFPIP10646 304 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 SPI1P17947 270 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 C19orf57Q0VDD7 668 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 DUOXA1Q1HG43 343 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 PDSS1Q5T2R2 415 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 DPY19L2P1Q6NXN4 242 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 GID4Q8IVV7 300 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 C7orf57Q8NEG2 295 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 OR14C36Q8NHC7 312 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 SFXN1Q9H9B4 322 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 SGK2Q9HBY8 427 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 MIOSQ9NXC5 875 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 VSX1Q9NZR4 365 aaPredicted RBP12.7□□□□□ -0.38
USP40-208ENST00000450966 ZNF629Q9UEG4 869 aaPredicted RBP12.7□□□□□ -0.38
USP40-208ENST00000450966 FBXL4Q9UKA2 621 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 SPEF2Q9C093 1822 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 AGPAT2O15120 278 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 ARPC1BO15143 372 aaKnown RBP12.7□□□□□ -0.38
USP40-208ENST00000450966 PPP1R11O60927 126 aaPredicted RBP12.7□□□□□ -0.38
USP40-208ENST00000450966 CDK14O94921 469 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 SFTPBP07988 381 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 SPAM1P38567 509 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 OR12D2P58182 307 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 CLLU1Q5K131 121 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 TMC8Q8IU68 726 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 ADAMTS15Q8TE58 950 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 SCLYQ96I15 445 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 HRH4Q9H3N8 390 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 SIX4Q9UIU6 781 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 MED16Q9Y2X0 877 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 KPTNQ9Y664 436 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 F10P00742 488 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 DHRS4L1P0CG22 281 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 HSD17B2P37059 387 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 CLCN7P51798 805 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 PUM1Q14671 1186 aaKnown RBP eCLIP12.7□□□□□ -0.38
USP40-208ENST00000450966 FCN2Q15485 313 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 LBHQ53QV2 105 aaPredicted RBP12.7□□□□□ -0.38
USP40-208ENST00000450966 FAM209BQ5JX69 171 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 C9orf64Q5T6V5 341 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 NIPA2Q8N8Q9 360 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 PNLDC1Q8NA58 520 aaKnown RBP12.7□□□□□ -0.38
USP40-208ENST00000450966 PLPP5Q8NEB5 264 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 OR4F6Q8NGB9 312 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 FRZBQ92765 325 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 AGO3Q9H9G7 860 aaKnown RBP12.7□□□□□ -0.38
USP40-208ENST00000450966 SLC22A11Q9NSA0 550 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 TRBC2A0A5B9 178 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 C7orf72A4D263 438 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 BTBD17A6NE02 478 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 METTL15A6NJ78 407 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 ESR1P03372 595 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 NMBRP28336 390 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 HTR3AP46098 478 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 OGDHQ02218 1023 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 LAPTM4AQ15012 233 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 ZBTB37Q5TC79 503 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 SMARCD3Q6STE5 483 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 MAMDC4Q6UXC1 1216 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 NLRC3Q7RTR2 1065 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 CEACAM19Q7Z692 300 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 CFAP52Q8N1V2 620 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 FKBP10Q96AY3 582 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 MOCOSQ96EN8 888 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 TXN2Q99757 166 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 YIPF4Q9BSR8 244 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 SIX2Q9NPC8 291 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 SLC2A4RGQ9NR83 387 aa12.7□□□□□ -0.38
USP40-208ENST00000450966 TCRBV7S3A2A0A539 114 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 DIRAS1O95057 198 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 C4BPAP04003 597 aaKnown RBP12.69□□□□□ -0.38
USP40-208ENST00000450966 AGXTP21549 392 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 GNALP38405 381 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 EMX2Q04743 252 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 ENPP7Q6UWV6 458 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 COX15Q7KZN9 410 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 PXKQ7Z7A4 578 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 HS3ST5Q8IZT8 346 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 NSMAFQ92636 917 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 EMID1Q96A84 441 aaPredicted RBP12.69□□□□□ -0.38
USP40-208ENST00000450966 SLC25A32Q9H2D1 315 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 SOD2P04179 222 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 GABRB3P28472 473 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 BDKRB2P30411 391 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 OR6V1Q8N148 313 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 LRRN4Q8WUT4 740 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 GIMAP1Q8WWP7 306 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 C5orf34Q96MH7 638 aa12.69□□□□□ -0.38
USP40-208ENST00000450966 ZNF599Q96NL3 588 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms