RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CNTNAP3BQ96NU0 1288 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 ACTRT3Q9BYD9 372 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 CNTNAP3Q9BZ76 1288 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 VN1R1Q9GZP7 353 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 OR51I1Q9H343 314 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 SOX17Q9H6I2 414 aaPredicted RBP16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 CXorf21Q9HAI6 301 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 SLC22A11Q9NSA0 550 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 P2RX2Q9UBL9 471 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 C19orf53Q9UNZ5 99 aaPredicted RBP16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 SATB2Q9UPW6 733 aa16.02■□□□□ 0.15
CCDC28B-202ENST00000421922 ACACBO00763 2458 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 OR2W5A6NFC9 320 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 C17orf105B2RV13 164 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 TGFBR3LH3BV60 316 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 UPK1AO00322 258 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 PLOD3O60568 738 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 KCNK5O95279 499 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 ONECUT2O95948 504 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 CD63P08962 238 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 ATP6V1B2P21281 511 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 PCGF2P35227 344 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 MAP4K2Q12851 820 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 ZNF155Q12901 538 aaPredicted RBP16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 SCARB2Q14108 478 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 GNA13Q14344 377 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 ZNF267Q14586 743 aaPredicted RBP16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 ZNHIT3Q15649 155 aaPredicted RBP16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 ELAVL1Q15717 326 aaKnown RBP16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 C6orf15Q6UXA7 325 aaPredicted RBP16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 SHISA6Q6ZSJ9 500 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 TMPRSS12Q86WS5 348 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 HORMAD2Q8N7B1 307 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 ADAMTS15Q8TE58 950 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 DOK4Q8TEW6 326 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 ART5Q96L15 291 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 YIPF4Q9BSR8 244 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 CRB3Q9BUF7 120 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 TMEM38AQ9H6F2 299 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 C19orf25Q9UFG5 118 aaPredicted RBP16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 CLCA3PQ9Y6N3 262 aa16.01■□□□□ 0.15
CCDC28B-202ENST00000421922 DUXAA6NLW8 204 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 AQP12BA6NM10 295 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 SLC30A4O14863 429 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 PRAMEF2O60811 474 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 FKBP6O75344 327 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 DKK1O94907 266 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 AGR2O95994 175 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 C1QCP02747 245 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 GZMMP51124 257 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 MVDP53602 400 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 EMP2P54851 167 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 CDK6Q00534 326 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 TARDBPQ13148 414 aaKnown RBP eCLIP16■□□□□ 0.15
CCDC28B-202ENST00000421922 CCNIQ14094 377 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 VEZF1Q14119 521 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 NKG7Q16617 165 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 TRMT12Q53H54 448 aaKnown RBP16■□□□□ 0.15
CCDC28B-202ENST00000421922 FAAH2Q6GMR7 532 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 SPPL2CQ8IUH8 684 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 TMEM151BQ8IW70 566 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 SLC44A2Q8IWA5 706 aaPredicted RBP16■□□□□ 0.15
CCDC28B-202ENST00000421922 AQP12AQ8IXF9 295 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 C10orf111Q8N326 155 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 GALNT15Q8N3T1 639 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 PLPP5Q8NEB5 264 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 FBXO30Q8TB52 745 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 XAGE5Q8WWM1 108 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 DAZLQ92904 295 aaKnown RBP16■□□□□ 0.15
CCDC28B-202ENST00000421922 POP5Q969H6 163 aaKnown RBP16■□□□□ 0.15
CCDC28B-202ENST00000421922 CHST8Q9H2A9 424 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 SLC26A1Q9H2B4 701 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 WDR54Q9H977 334 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 ANKRA2Q9H9E1 313 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 GPATCH2Q9NW75 528 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 NTMQ9P121 344 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 C3orf18Q9UK00 162 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 ERVK-19Q9WJR5 959 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 PADI2Q9Y2J8 665 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 PCDHGA3Q9Y5H0 932 aa16■□□□□ 0.15
CCDC28B-202ENST00000421922 IGKV3D-11A0A0A0MRZ8 115 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 TCRBV16S1A1N1A0A5B0 115 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 A8MUA0 341 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 IDSB3KWA1 339 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 SLC28A2O43868 658 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 MGRN1O60291 552 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 ALOX12BO75342 701 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 TNFRSF21O75509 655 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 CYC1P08574 325 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 NUDT7P0C024 238 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 CT62P0C5K7 136 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 OR12D1P0DN82 309 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 ARAFP10398 606 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 BMP2P12643 396 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 PSMA4P25789 261 aaKnown RBP15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 SLC5A2P31639 672 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 AP2B1P63010 937 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 MRPS22P82650 360 aaKnown RBP15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 HPCAP84074 193 aa15.99■□□□□ 0.15
CCDC28B-202ENST00000421922 EXOSC7Q15024 291 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms