RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 SOX3P41225 446 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 CYB561P49447 251 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 HLCSP50747 726 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 NNATQ16517 81 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 FHL5Q5TD97 284 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 NXNQ6DKJ4 435 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 RGS9BPQ6ZS82 235 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 ZNF551Q7Z340 670 aaPredicted RBP11.55□□□□□ -0.56
SKA1-203ENST00000417656 R3HCC1LQ7Z5L2 792 aaKnown RBP11.55□□□□□ -0.56
SKA1-203ENST00000417656 ZNF227Q86WZ6 799 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 CYP4Z2PQ8N1L4 340 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 ARFGAP2Q8N6H7 521 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 ZFP28Q8NHY6 868 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 MTERF3Q96E29 417 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 MAELQ96JY0 434 aaKnown RBP11.55□□□□□ -0.56
SKA1-203ENST00000417656 MARK4Q96L34 752 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 OR52B2Q96RD2 323 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 ITPAQ9BY32 194 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 TRIM4Q9C037 500 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 KLHL1Q9NR64 748 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 AIG1Q9NVV5 245 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 LRFN1Q9P244 771 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 EXPH5Q8NEV8 1989 aa11.55□□□□□ -0.56
SKA1-203ENST00000417656 C2orf92A0A1B0GVN3 265 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 TTLL8A6PVC2 850 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 A8MVJ9 347 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 TCP11X1B4DZS4 312 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 SLC25A12O75746 678 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 NEURL1O76050 574 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 LAMP1P11279 417 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 PRPS1L1P21108 318 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 GPC1P35052 558 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 FRKP42685 505 aaPredicted RBP11.54□□□□□ -0.56
SKA1-203ENST00000417656 CDK9P50750 372 aaKnown RBP11.54□□□□□ -0.56
SKA1-203ENST00000417656 NR0B1P51843 470 aaKnown RBP11.54□□□□□ -0.56
SKA1-203ENST00000417656 MLLT10P55197 1068 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 NME5P56597 212 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 CLDN8P56748 225 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 C21orf58P58505 322 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 TLE1Q04724 770 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 ZNF155Q12901 538 aaPredicted RBP11.54□□□□□ -0.56
SKA1-203ENST00000417656 ZNF766Q5HY98 468 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 CPTPQ5TA50 214 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 HLA-DQA1Q5Y7H0 255 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 TMEM198Q66K66 360 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 SPINK14Q6IE38 97 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 RIMKLAQ8IXN7 391 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 ZNF441Q8N8Z8 693 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 SLC22A8Q8TCC7 542 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 ADIPOR1Q96A54 375 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 ZBED6CLQ96FA7 236 aaPredicted RBP11.54□□□□□ -0.56
SKA1-203ENST00000417656 MAGED4Q96JG8 741 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 C5orf34Q96MH7 638 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 DPY30Q9C005 99 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 DDX18Q9NVP1 670 aaKnown RBP11.54□□□□□ -0.56
SKA1-203ENST00000417656 HPF1Q9NWY4 346 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 ERVK-11Q9UQG0 969 aa11.54□□□□□ -0.56
SKA1-203ENST00000417656 CNTRLQ7Z7A1 2325 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 C9JVG2 144 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 ANKRD28O15084 1053 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 PLOD3O60568 738 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 EDF1O60869 148 aaKnown RBP11.53□□□□□ -0.56
SKA1-203ENST00000417656 SLITRK5O94991 958 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 CD46P15529 392 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 DDX5P17844 614 aaKnown RBP11.53□□□□□ -0.56
SKA1-203ENST00000417656 EMDP50402 254 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 PMP22Q01453 160 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 GUCY1A3Q02108 690 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 PIGGQ5H8A4 983 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 EPGNQ6UW88 154 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 LYPD8Q6UX82 237 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 IL20RBQ6UXL0 311 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 TMEM64Q6YI46 380 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 SPATA19Q7Z5L4 167 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 CISD2Q8N5K1 135 aaKnown RBP11.53□□□□□ -0.56
SKA1-203ENST00000417656 HORMAD2Q8N7B1 307 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 ACTRT2Q8TDY3 377 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 ERP27Q96DN0 273 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 THOC1Q96FV9 657 aaKnown RBP11.53□□□□□ -0.56
SKA1-203ENST00000417656 SCMH1Q96GD3 660 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 EBF4Q9BQW3 602 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 NXF5Q9H1B4 397 aaKnown RBP11.53□□□□□ -0.56
SKA1-203ENST00000417656 TRIM45Q9H8W5 580 aaPredicted RBP11.53□□□□□ -0.56
SKA1-203ENST00000417656 FOLH1BQ9HBA9 442 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 ACSS1Q9NUB1 689 aaPredicted RBP11.53□□□□□ -0.56
SKA1-203ENST00000417656 ATAD3AQ9NVI7 634 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 MAP10Q9P2G4 905 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 PRODH2Q9UF12 536 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 CFL2Q9Y281 166 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 NTNG1Q9Y2I2 539 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 ZNF462Q96JM2 2506 aa11.53□□□□□ -0.56
SKA1-203ENST00000417656 SPENQ96T58 3664 aaKnown RBP11.53□□□□□ -0.56
SKA1-203ENST00000417656 A0A087WV62 115 aa11.52□□□□□ -0.57
SKA1-203ENST00000417656 PYCARD-AS1I3L0S3 204 aa11.52□□□□□ -0.57
SKA1-203ENST00000417656 UPK1AO00322 258 aa11.52□□□□□ -0.57
SKA1-203ENST00000417656 PLOD2O00469 737 aa11.52□□□□□ -0.57
SKA1-203ENST00000417656 CDK2AP1O14519 115 aa11.52□□□□□ -0.57
SKA1-203ENST00000417656 DYNC1I1O14576 645 aa11.52□□□□□ -0.57
SKA1-203ENST00000417656 POLR3GO15318 223 aaPredicted RBP11.52□□□□□ -0.57
SKA1-203ENST00000417656 NME2P1O60361 137 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms