RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 SIX5Q8N196 739 aa11.36□□□□□ -0.59
PTPRF-205ENST00000414879 ZNF619Q8N2I2 560 aa11.36□□□□□ -0.59
PTPRF-205ENST00000414879 VWA5B2Q8N398 1253 aa11.36□□□□□ -0.59
PTPRF-205ENST00000414879 PEX11GQ96HA9 241 aa11.36□□□□□ -0.59
PTPRF-205ENST00000414879 SACM1LQ9NTJ5 587 aa11.36□□□□□ -0.59
PTPRF-205ENST00000414879 MKLN1Q9UL63 735 aa11.36□□□□□ -0.59
PTPRF-205ENST00000414879 PCDHGA7Q9Y5G6 932 aa11.36□□□□□ -0.59
PTPRF-205ENST00000414879 ANTXRLA6NF34 631 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 FABP12A6NFH5 140 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 BLOC1S5-TXNDC5H3BN57 136 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 SOX1O00570 391 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-205ENST00000414879 TP73O15350 636 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 PRODHO43272 600 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 ORC5O43913 435 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 IL1RNP18510 177 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 CAPN3P20807 821 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 TMBIM6P55061 237 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 NPRL3Q12980 569 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 CBLBQ13191 982 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 PERM1Q5SV97 790 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 TMEM225Q6GV28 225 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 TRIM46Q7Z4K8 759 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 EDAQ92838 391 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 ALOXE3Q9BYJ1 711 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 CRISPLD2Q9H0B8 497 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 LAMP5Q9UJQ1 280 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 A0A1B0GVI7 797 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 RTCAO00442 366 aaKnown RBP11.35□□□□□ -0.59
PTPRF-205ENST00000414879 ICAM2P13598 275 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 FOLR3P41439 243 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 EMP2P54851 167 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 SIM1P81133 766 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-205ENST00000414879 HENMT1Q5T8I9 393 aaKnown RBP11.35□□□□□ -0.59
PTPRF-205ENST00000414879 USP53Q70EK8 1073 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 TCEANCQ8N8B7 351 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 TP53INP1Q96A56 240 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 IFT46Q9NQC8 304 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 NFKBIL1Q9UBC1 381 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-205ENST00000414879 SIPA1L1O43166 1804 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 A0A1W2PRQ8 180 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 CENPBD1B2RD01 187 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 GPR75O95800 540 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 MAGP20916 626 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 CCNIQ14094 377 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 EXOC3L2Q2M3D2 409 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 ZNF542PQ5EBM4 170 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 CHST4Q8NCG5 386 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 OR8J2Q8NGG1 315 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 DDIT4LQ96D03 193 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 CCDC115Q96NT0 180 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 NPLQ9BXD5 320 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-205ENST00000414879 NPIPA2E9PIF3 369 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 NPIPA3F8WFD2 350 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 HTRA4P83105 476 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-205ENST00000414879 REEP5Q00765 189 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 MLLT1Q03111 559 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-205ENST00000414879 FGL2Q14314 439 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 SEC23BQ15437 767 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 C6orf141Q5SZD1 244 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 SLC5A8Q8N695 610 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 PPP1R14BQ96C90 147 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 KIR3DX1Q9H7L2 352 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 ALKBH4Q9NXW9 302 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 NKX1-2Q9UD57 310 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-205ENST00000414879 NOX1Q9Y5S8 564 aa11.35□□□□□ -0.59
PTPRF-205ENST00000414879 NME4O00746 187 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 KLHL18O94889 574 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 SELENOVP59797 346 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 RNF220Q5VTB9 566 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 BAIAP2L2Q6UXY1 529 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 MARCH9Q86YJ5 346 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 OR2T4Q8NH00 348 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 RHBDD1Q8TEB9 315 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 PMM1Q92871 262 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 INSM2Q96T92 566 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-205ENST00000414879 LMF2Q9BU23 707 aaKnown RBP11.34□□□□□ -0.59
PTPRF-205ENST00000414879 C1GALT1Q9NS00 363 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 CENPMQ9NSP4 180 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 OR52A4PA6NMU1 304 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 LSM1O15116 133 aaKnown RBP11.34□□□□□ -0.59
PTPRF-205ENST00000414879 ZNF888P0CJ79 500 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-205ENST00000414879 SRFP11831 508 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 ETFAP13804 333 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 TEAD1P28347 426 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 CLRN1P58418 232 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 HYAL2Q12891 473 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 WSCD2Q2TBF2 565 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 GTF2IRD2BQ6EKJ0 949 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 C5orf46Q6UWT4 87 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 GTF2IRD2Q86UP8 949 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 CCDC107Q8WV48 283 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 IER2Q9BTL4 223 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.34□□□□□ -0.59
PTPRF-205ENST00000414879 DCSTAMPQ9H295 470 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 ADAMTS6Q9UKP5 1117 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 CCRL2O00421 344 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 ERCC1P07992 297 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-205ENST00000414879 CASP6P55212 293 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 RAB38P57729 211 aa11.34□□□□□ -0.59
PTPRF-205ENST00000414879 ZNF227Q86WZ6 799 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms