RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 GTF2H4Q92759 462 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 LPPQ93052 612 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 PCDHB3Q9Y5E6 796 aa12.77□□□□□ -0.36
CCDC88A-204ENST00000413716 B4DGG1 531 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 CPNE6O95741 557 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 AKAIN1P0CW23 69 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 PNMTP11086 282 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 DBX2Q6ZNG2 339 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 SULF2Q8IWU5 870 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 TMEM74Q96NL1 305 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 RIOX1Q9H6W3 641 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 KLHL42Q9P2K6 505 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 RGL2O15211 777 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 NUPL2O15504 423 aaKnown RBP12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 IL13RA1P78552 427 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 NFATC2Q13469 925 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 BANPQ8N9N5 519 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 MMABQ96EY8 250 aaPredicted RBP12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 SERTAD3Q9UJW9 196 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 MANSC4A6NHS7 340 aaPredicted RBP12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 SLC22A31A6NKX4 558 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 F6UZH7 168 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 NFKBIEO00221 500 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 CKMT2P17540 419 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 BIDP55957 195 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 IRF9Q00978 393 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 NKPD1Q17RQ9 610 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 TSTD2Q5T7W7 516 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 LRFN4Q6PJG9 635 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 MEX3BQ6ZN04 569 aaKnown RBP12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 NPAS3Q8IXF0 933 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 IRGQQ8WZA9 623 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 PINK1Q9BXM7 581 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 ZDHHC3Q9NYG2 299 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 F2RP25116 425 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 AVPI1Q5T686 147 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 FAM109AQ8N4B1 249 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 ACER1Q8TDN7 264 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 PKP2Q99959 881 aa12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 FAM212BQ9NTI7 297 aaPredicted RBP12.77□□□□□ -0.37
CCDC88A-204ENST00000413716 SCN2AQ99250 2005 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 LATO43561 262 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 UQCRC2P22695 453 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 UBE2NP61088 152 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 NKX3-2P78367 333 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 GHRHRQ02643 423 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 CELF3Q5SZQ8 465 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 SYT14Q8NB59 555 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 KIAA1143Q96AT1 154 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 SH3YL1Q96HL8 342 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 TMPRSS5Q9H3S3 457 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 SARDHQ9UL12 918 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 CHRNA1P02708 482 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 CFIP05156 583 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 HBG1P69891 147 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 HBG2P69892 147 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 CLVS2Q5SYC1 327 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 ADGRF1Q5T601 910 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 FGGYQ96C11 551 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 OPA3Q9H6K4 179 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 NEXMIFQ5QGS0 1516 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 WNT9AO14904 365 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 PPP1R2P9O14990 202 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 SCGB1C2P0DMR2 95 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 FAM69AQ5T7M9 428 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 INTS12Q96CB8 462 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 QRSL1Q9H0R6 528 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 TLE6Q9H808 572 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 FAM96BQ9Y3D0 163 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 A0A1W2PP18 115 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 CLEC3BP05452 202 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 OR1D2P34982 312 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 TMEM31Q5JXX7 168 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 NMNAT2Q9BZQ4 307 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 TAF10Q12962 218 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 TMEM173Q86WV6 379 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 CACNG2Q9Y698 323 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 FSCN2O14926 492 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 CDKN2BP42772 138 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 FKBP10Q96AY3 582 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 ARSGQ96EG1 525 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 DUSP9Q99956 384 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 PRODH2Q9UF12 536 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 HPRP00739 348 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 SPATA31D3P0C874 917 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 TACR2P21452 398 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 YBEYP58557 167 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 POU6F2P78424 691 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 CCINQ13939 588 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 RTL6Q6ICC9 239 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 SPATA31D4Q6ZUB0 917 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 PLD5Q8N7P1 536 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 LNX1Q8TBB1 728 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 SGK3Q96BR1 496 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 FOXRED1Q96CU9 486 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 METTL2AQ96IZ6 378 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 LRIG1Q96JA1 1093 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 MFFQ9GZY8 342 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 BCORL1Q5H9F3 1711 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms