RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LOC110117498-PIK3R3F6TDL0 507 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 SULT1C4O75897 302 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 AIFM1O95831 613 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 RECKO95980 971 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 STEAP3Q658P3 488 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 HSDL2Q6YN16 418 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 ALDH16A1Q8IZ83 802 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 METTL27Q8N6F8 245 aaPredicted RBP12.64□□□□□ -0.39
VPS54-203ENST00000409558 SLC17A9Q9BYT1 436 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 GABARAPL1Q9H0R8 117 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 TMEM168Q9H0V1 697 aa12.64□□□□□ -0.39
VPS54-203ENST00000409558 SIRT3Q9NTG7 399 aaPredicted RBP12.64□□□□□ -0.39
VPS54-203ENST00000409558 CHCHD3Q9NX63 227 aaKnown RBP12.64□□□□□ -0.39
VPS54-203ENST00000409558 DENND4CQ5VZ89 1909 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 A0A1W2PPV9 198 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 EFCAB10A6NFE3 127 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 CSF2P04141 144 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 KCNC4Q03721 635 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 PRDX1Q06830 199 aaKnown RBP12.63□□□□□ -0.39
VPS54-203ENST00000409558 SPANXN2Q5MJ10 180 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 KRT73Q86Y46 540 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 GATAD2AQ86YP4 633 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 AMDHD1Q96NU7 426 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 MYADMQ96S97 322 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 BEX2Q9BXY8 128 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 P2RX2Q9UBL9 471 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 LRIT2A6NDA9 550 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 RNGTTO60942 597 aaKnown RBP12.63□□□□□ -0.39
VPS54-203ENST00000409558 MMP11P24347 488 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 RPL3P39023 403 aaKnown RBP12.63□□□□□ -0.39
VPS54-203ENST00000409558 RAB28P51157 221 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 KLHL12Q53G59 568 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 FIGNL1Q6PIW4 674 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 PARGQ86W56 976 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 TRIM48Q8IWZ4 208 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 OR4C15Q8NGM1 316 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 DMRTB1Q96MA1 342 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 NEURL2Q9BR09 285 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 AICDAQ9GZX7 198 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 GPR34Q9UPC5 381 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 TSPAN11A1L157 253 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 RPS7P62081 194 aaKnown RBP12.63□□□□□ -0.39
VPS54-203ENST00000409558 SLC16A11Q8NCK7 471 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 CXorf40BQ96DE9 158 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 ASPNQ9BXN1 380 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 RACGAP1Q9H0H5 632 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 AKIP1Q9NQ31 210 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 NECTIN3Q9NQS3 549 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 TMEM74BQ9NUR3 256 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 CSNK1G3Q9Y6M4 447 aa12.63□□□□□ -0.39
VPS54-203ENST00000409558 DSCR3O14972 297 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 PORP16435 677 aaPredicted RBP12.62□□□□□ -0.39
VPS54-203ENST00000409558 PRSS41Q7RTY9 318 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 ZER1Q7Z7L7 766 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 GALNT12Q8IXK2 581 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 TP53I13Q8NBR0 393 aaPredicted RBP12.62□□□□□ -0.39
VPS54-203ENST00000409558 FAM46DQ8NEK8 389 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 CHPT1Q8WUD6 406 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 MAFFQ9ULX9 164 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 GPX5O75715 221 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 CDRT1O95170 752 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 SLC2A10O95528 541 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 ZNF888P0CJ79 500 aaPredicted RBP12.62□□□□□ -0.39
VPS54-203ENST00000409558 CD79BP40259 229 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 RGS8P57771 180 aaPredicted RBP12.62□□□□□ -0.39
VPS54-203ENST00000409558 ERVK-21P61565 698 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 RBBP4Q09028 425 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 RNF165Q6ZSG1 346 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 GPR155Q7Z3F1 870 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 KIAA0907Q7Z7F0 614 aaPredicted RBP12.62□□□□□ -0.39
VPS54-203ENST00000409558 CELF2-AS1Q8N7Q2 184 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 OR5T3Q8NGG3 340 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 ADAMTS15Q8TE58 950 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 TRMT61AQ96FX7 289 aaKnown RBP12.62□□□□□ -0.39
VPS54-203ENST00000409558 TMED9Q9BVK6 235 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 MED20Q9H944 212 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 SLC6A20Q9NP91 592 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 SLC9A8Q9Y2E8 581 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 SLC27A6Q9Y2P4 619 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 H3BSH0 61 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 PLD2O14939 933 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 ACSL1P33121 698 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 MFSD4AQ8N468 514 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 PARP16Q8N5Y8 322 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 SETD7Q8WTS6 366 aaKnown RBP12.62□□□□□ -0.39
VPS54-203ENST00000409558 CDADC1Q9BWV3 514 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 KLHL3Q9UH77 587 aa12.62□□□□□ -0.39
VPS54-203ENST00000409558 YBX2Q9Y2T7 364 aaKnown RBP12.62□□□□□ -0.39
VPS54-203ENST00000409558 FAM170BA6NMN3 283 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 NCR1O76036 304 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 KLF8O95600 359 aaPredicted RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 CCNYL3P0C7X3 344 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 HOXB2P14652 356 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 ZNF91Q05481 1191 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 EEF1A2Q05639 463 aaKnown RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 PDE7AQ13946 482 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 RNASE12Q5GAN4 147 aaKnown RBP12.61□□□□□ -0.39
VPS54-203ENST00000409558 UNC5DQ6UXZ4 953 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 SLC46A3Q7Z3Q1 461 aa12.61□□□□□ -0.39
VPS54-203ENST00000409558 NUP43Q8NFH3 380 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms