RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 ELOAQ14241 798 aaKnown RBP13.15□□□□□ -0.3
GPNMB-203ENST00000409458 NRF1Q16656 503 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 C1orf189Q5VU69 101 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 YOD1Q5VVQ6 348 aaPredicted RBP13.15□□□□□ -0.3
GPNMB-203ENST00000409458 LAIR1Q6GTX8 287 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 PATL1Q86TB9 770 aaKnown RBP13.15□□□□□ -0.3
GPNMB-203ENST00000409458 ATOH1Q92858 354 aaPredicted RBP13.15□□□□□ -0.3
GPNMB-203ENST00000409458 OR6C1Q96RD1 312 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 BDH2Q9BUT1 245 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 ACTRT3Q9BYD9 372 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 IL1RAPQ9NPH3 570 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 LANCL2Q9NS86 450 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 SIDT1Q9NXL6 827 aaKnown RBP13.15□□□□□ -0.3
GPNMB-203ENST00000409458 DNAJB9Q9UBS3 223 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 CNOT11Q9UKZ1 510 aaKnown RBP13.15□□□□□ -0.3
GPNMB-203ENST00000409458 C19orf53Q9UNZ5 99 aaPredicted RBP13.15□□□□□ -0.3
GPNMB-203ENST00000409458 COL27A1Q8IZC6 1860 aaPredicted RBP13.15□□□□□ -0.3
GPNMB-203ENST00000409458 A0A087WV62 115 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 A0A1B0GX78 115 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 CLDN4O14493 209 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 ACOX3O15254 700 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 ASNA1O43681 348 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 PLOD3O60568 738 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 LDOC1O95751 146 aaPredicted RBP13.15□□□□□ -0.31
GPNMB-203ENST00000409458 CHRM4P08173 479 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 NR2F1P10589 423 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 HOXB6P17509 224 aaKnown RBP13.15□□□□□ -0.31
GPNMB-203ENST00000409458 TNFRSF1BP20333 461 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 FBLP22087 321 aaKnown RBP13.15□□□□□ -0.31
GPNMB-203ENST00000409458 ARSFP54793 590 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 STX4Q12846 297 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 DSG2Q14126 1118 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 EXOSC7Q15024 291 aaKnown RBP13.15□□□□□ -0.31
GPNMB-203ENST00000409458 SF3A2Q15428 464 aaKnown RBP13.15□□□□□ -0.31
GPNMB-203ENST00000409458 CLPPQ16740 277 aaPredicted RBP13.15□□□□□ -0.31
GPNMB-203ENST00000409458 CMPK2Q5EBM0 449 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 PHF19Q5T6S3 580 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 CDC73Q6P1J9 531 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 ZBTB49Q6ZSB9 765 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 CBR4Q8N4T8 237 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 SMYD1Q8NB12 490 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 TMBIM1Q969X1 311 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 CTHRC1Q96CG8 243 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 NAF1Q96HR8 494 aaKnown RBP13.15□□□□□ -0.31
GPNMB-203ENST00000409458 TREX2Q9BQ50 279 aaPredicted RBP13.15□□□□□ -0.31
GPNMB-203ENST00000409458 C9orf16Q9BUW7 83 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 YIPF2Q9BWQ6 316 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 VCXQ9H320 206 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 ADAP2Q9NPF8 381 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 NECTIN3Q9NQS3 549 aa13.15□□□□□ -0.31
GPNMB-203ENST00000409458 RALGAPA1Q6GYQ0 2036 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 ZNF318Q5VUA4 2279 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 TMEM247A6NEH6 219 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 FLRT2O43155 660 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 DIRAS1O95057 198 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 TIAF1O95411 115 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 CBX7O95931 251 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 IFI6P09912 130 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 ACP2P11117 423 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 ZNF23P17027 643 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 ACP1P24666 158 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 IST1P53990 364 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 CRISP3P54108 245 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 HSD17B7P56937 341 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 TXNL4AP83876 142 aaKnown RBP13.14□□□□□ -0.31
GPNMB-203ENST00000409458 DUSP8Q13202 625 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 CYP27C1Q4G0S4 372 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 EXOSC6Q5RKV6 272 aaKnown RBP13.14□□□□□ -0.31
GPNMB-203ENST00000409458 B3GNT8Q7Z7M8 397 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 GALNT12Q8IXK2 581 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 ST13P4Q8IZP2 240 aaPredicted RBP13.14□□□□□ -0.31
GPNMB-203ENST00000409458 VWA5B2Q8N398 1253 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 METTL25Q8N6Q8 603 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 SLC16A11Q8NCK7 471 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 SLC35A4Q96G79 324 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 RSPO3Q9BXY4 272 aaPredicted RBP13.14□□□□□ -0.31
GPNMB-203ENST00000409458 ALOXE3Q9BYJ1 711 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 ZNF304Q9HCX3 659 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 VNN3Q9NY84 501 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 ZNF639Q9UID6 485 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 CDC14AQ9UNH5 594 aa13.14□□□□□ -0.31
GPNMB-203ENST00000409458 C7orf72A4D263 438 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 PRAMEF25A6NGN4 478 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 CDX4O14627 284 aaPredicted RBP13.13□□□□□ -0.31
GPNMB-203ENST00000409458 PDE9AO76083 593 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 MFN2O95140 757 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 RASAL1O95294 804 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 RECKO95980 971 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 IFNA14P01570 189 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 CD247P20963 164 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 PDX1P52945 283 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 IQCCQ4KMZ1 466 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 GPAT3Q53EU6 434 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 IFI44LQ53G44 452 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 ARHGAP40Q5TG30 622 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 RHBDD2Q6NTF9 364 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 PPP4R4Q6NUP7 873 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 TSEN54Q7Z6J9 526 aaKnown RBP13.13□□□□□ -0.31
GPNMB-203ENST00000409458 OR52R1Q8NGF1 315 aa13.13□□□□□ -0.31
GPNMB-203ENST00000409458 BBS10Q8TAM1 723 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms