RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 MTPNP58546 118 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 FUT7Q11130 342 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 DNAL1Q4LDG9 190 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 RABL3Q5HYI8 236 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 FHL5Q5TD97 284 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 SIMC1Q8NDZ2 872 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 OR52R1Q8NGF1 315 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 OR8J3Q8NGG0 315 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 KCNE4Q8WWG9 221 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 NEURL3Q96EH8 262 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 SLC35G5Q96KT7 338 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 CDRT15Q96T59 188 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 GPATCH1Q9BRR8 931 aaKnown RBP16.84■□□□□ 0.29
SDC1-203ENST00000403076 ZNF639Q9UID6 485 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 FAF1Q9UNN5 650 aaPredicted RBP16.84■□□□□ 0.29
SDC1-203ENST00000403076 CORO2BQ9UQ03 480 aa16.84■□□□□ 0.29
SDC1-203ENST00000403076 PEX12O00623 359 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 CBX7O95931 251 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 S1PR1P21453 382 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 SOX18P35713 384 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 CRATP43155 626 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 SLC7A2P52569 658 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 CLN3Q13286 438 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 SELPLGQ14242 412 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 SAXO2Q658L1 398 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 KIRREL2Q6UWL6 708 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 RNF111Q6ZNA4 994 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 PPP1R32Q7Z5V6 425 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 RNF130Q86XS8 419 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 B3GNT7Q8NFL0 401 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 OR7G1Q8NGA0 311 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 NCLNQ969V3 563 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 NACC2Q96BF6 587 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 MS4A4EQ96PG1 132 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 ECSITQ9BQ95 431 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 CPPED1Q9BRF8 314 aaPredicted RBP16.83■□□□□ 0.28
SDC1-203ENST00000403076 YIPF4Q9BSR8 244 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 ZNF700Q9H0M5 742 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 OR10A5Q9H207 317 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 SPAG4Q9NPE6 437 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 NTMQ9P121 344 aa16.83■□□□□ 0.28
SDC1-203ENST00000403076 SOCS6O14544 535 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 PRAMEF2O60811 474 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 DDAH2O95865 285 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 C1QCP02747 245 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 HMGN2P05204 90 aaKnown RBP16.82■□□□□ 0.28
SDC1-203ENST00000403076 MATN1P21941 496 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 PRIM2P49643 509 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 RPS26P62854 115 aaKnown RBP16.82■□□□□ 0.28
SDC1-203ENST00000403076 IL10RAQ13651 578 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 LASP1Q14847 261 aaKnown RBP16.82■□□□□ 0.28
SDC1-203ENST00000403076 PCOLCEQ15113 449 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.82■□□□□ 0.28
SDC1-203ENST00000403076 BNC2Q6ZN30 1099 aaPredicted RBP16.82■□□□□ 0.28
SDC1-203ENST00000403076 NDUFAF7Q7L592 441 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 SLC15A3Q8IY34 581 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 ZNF248Q8NDW4 579 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 OR11G2Q8NGC1 345 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 OR52N2Q8NGI0 321 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 ZNF721Q8TF20 911 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 JADE3Q92613 823 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 MCUR1Q96AQ8 359 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 WDR77Q9BQA1 342 aaPredicted RBP16.82■□□□□ 0.28
SDC1-203ENST00000403076 NUDT9Q9BW91 350 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 IKZF5Q9H5V7 419 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 EPS8L2Q9H6S3 715 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 ANGPTL2Q9UKU9 493 aa16.82■□□□□ 0.28
SDC1-203ENST00000403076 IGHV1-45A0A0A0MS14 117 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 NSG1A0A0A6YYJ2 146 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 NME6O75414 186 aaPredicted RBP16.81■□□□□ 0.28
SDC1-203ENST00000403076 COX6A1P12074 109 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 SLC26A5P58743 744 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 VAC14Q08AM6 782 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 ZNF155Q12901 538 aaPredicted RBP16.81■□□□□ 0.28
SDC1-203ENST00000403076 RGNQ15493 299 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 BTBD16Q32M84 506 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 C8orf82Q6P1X6 216 aaPredicted RBP16.81■□□□□ 0.28
SDC1-203ENST00000403076 ZNF321PQ8N8H1 164 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 OR1N1Q8NGS0 311 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 FBXO30Q8TB52 745 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 TMEM125Q96AQ2 219 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 C16orf58Q96GQ5 468 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 IP6K3Q96PC2 410 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 THTPAQ9BU02 230 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 ACTRT3Q9BYD9 372 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 LRMDAQ9H2I8 198 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 PIF1Q9H611 641 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 CCDC86Q9H6F5 360 aaKnown RBP16.81■□□□□ 0.28
SDC1-203ENST00000403076 GPATCH2Q9NW75 528 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 CMTM6Q9NX76 183 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 PRODH2Q9UF12 536 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 CFL2Q9Y281 166 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 AP3M1Q9Y2T2 418 aa16.81■□□□□ 0.28
SDC1-203ENST00000403076 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.81■□□□□ 0.28
SDC1-203ENST00000403076 CDC14CA4D256 554 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 TLX3O43711 291 aaPredicted RBP16.8■□□□□ 0.28
SDC1-203ENST00000403076 DNAJC8O75937 253 aaPredicted RBP16.8■□□□□ 0.28
SDC1-203ENST00000403076 PGM1P36871 562 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 KHKP50053 298 aa16.8■□□□□ 0.28
SDC1-203ENST00000403076 ANXA11P50995 505 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms