RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 MAP2K5Q13163 448 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 LRRC73Q5JTD7 316 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 CCNL2Q96S94 520 aaPredicted RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 PARD6AQ9NPB6 346 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 CCM2LQ9NUG4 571 aaPredicted RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 TCOF1Q13428 1488 aaKnown RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 A0A0B4J2A0 478 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 DPM1O60762 260 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 SLC25A14O95258 325 aaPredicted RBP8.37□□□□□ -1.07
LIG3-202ENST00000378526 ARAFP10398 606 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 HTR2CP28335 458 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 TAS2R46P59540 309 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 GSTM4Q03013 218 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 PTP4A2Q12974 167 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 MSMO1Q15800 293 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 VWA1Q6PCB0 445 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 EPGNQ6UW88 154 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 SULF2Q8IWU5 870 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 SFXN5Q8TD22 340 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ZNF317Q96PQ6 595 aaPredicted RBP8.37□□□□□ -1.07
LIG3-202ENST00000378526 ATG101Q9BSB4 218 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 SHPKQ9UHJ6 478 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ZNF609O15014 1411 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 TRBC2A0A5B9 178 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 FAM170BA6NMN3 283 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 SYT7O43581 403 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 DNPH1O43598 174 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 KLF8O95600 359 aaPredicted RBP8.37□□□□□ -1.07
LIG3-202ENST00000378526 LPLP06858 475 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 RFC2P35250 354 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 HCAR3P49019 387 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 PPP4CP60510 307 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 MRPS34P82930 218 aaKnown RBP8.37□□□□□ -1.07
LIG3-202ENST00000378526 ENDOGQ14249 297 aaKnown RBP8.37□□□□□ -1.07
LIG3-202ENST00000378526 PPP1R3AQ16821 1122 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 Q1RN00 199 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ZNF630Q2M218 657 aaPredicted RBP8.37□□□□□ -1.07
LIG3-202ENST00000378526 PRR27Q6MZM9 219 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 NLGN1Q8N2Q7 840 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 HSD17B11Q8NBQ5 300 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 OR51L1Q8NGJ5 315 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 EDEM1Q92611 657 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 HSH2DQ96JZ2 352 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 SDHAF3Q9NRP4 125 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ICE1Q9Y2F5 2266 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 PHOX2AO14813 284 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 KCNJ5P48544 419 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 SLC11A1P49279 550 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 UQCC3Q6UW78 93 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ACBD7Q8N6N7 88 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 TCTEX1D1Q8N7M0 179 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 OR4M1Q8NGD0 313 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 FAM3CQ92520 227 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 CNN2Q99439 309 aaKnown RBP8.37□□□□□ -1.07
LIG3-202ENST00000378526 POP1Q99575 1024 aaKnown RBP8.37□□□□□ -1.07
LIG3-202ENST00000378526 LHPPQ9H008 270 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 TM7SF3Q9NS93 570 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 CD8B2A6NJW9 211 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 K7EQM0 130 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ECI2O75521 394 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 DLDP09622 509 aaKnown RBP8.37□□□□□ -1.07
LIG3-202ENST00000378526 CD8BP10966 210 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 HSPA7P48741 367 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 NCBP2P52298 156 aaKnown RBP eCLIP8.37□□□□□ -1.07
LIG3-202ENST00000378526 MFGE8Q08431 387 aaPredicted RBP8.37□□□□□ -1.07
LIG3-202ENST00000378526 LDB1Q86U70 411 aaPredicted RBP8.37□□□□□ -1.07
LIG3-202ENST00000378526 MINDY1Q8N5J2 469 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 SEMA3CQ99985 751 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 CHRDL1Q9BU40 450 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ASB6Q9NWX5 421 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 TEX50A0A1B0GTY4 177 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 LOC102723971A0A1B0GUV8 181 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 DCDC2CA8MYV0 355 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 C19orf81C9J6K1 198 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 M0R3H8 397 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 MAP2K4P45985 399 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 HNRNPKP61978 463 aaKnown RBP eCLIP8.37□□□□□ -1.07
LIG3-202ENST00000378526 FRMD1Q8N878 549 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 MARCH2Q9P0N8 246 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 GOLT1BQ9Y3E0 138 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 E5RJQ4 531 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 SERPINE2P07093 398 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 SPTBP11277 2137 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ACPPP15309 386 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 MLLT10P55197 1068 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 KCNAB2Q13303 367 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ZPBP2Q6X784 338 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 LINC00299Q6ZSB3 139 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 UNC93AQ86WB7 457 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 C2CD4CQ8TF44 421 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 CRLF2Q9HC73 371 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 TIMM22Q9Y584 194 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 TP53I11O14683 189 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 ZNF44P15621 663 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 RHCEP18577 417 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 RIN1Q13671 783 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 PCBP1Q15365 356 aaKnown RBP eCLIP8.37□□□□□ -1.07
LIG3-202ENST00000378526 PARP15Q460N3 678 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 CYBRD1Q53TN4 286 aa8.37□□□□□ -1.07
LIG3-202ENST00000378526 PAGE3Q5JUK9 113 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms