RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 FOLR1P15328 257 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 NELFEP18615 380 aaKnown RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 DNAJA1P31689 397 aaKnown RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 YAP1P46937 504 aaKnown RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 ERV3-1Q14264 604 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 PRICKLE4Q2TBC4 344 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 HMGN2P46Q86SG4 172 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 HIPK1Q86Z02 1210 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 D2HGDHQ8N465 521 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 METTL25Q8N6Q8 603 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 SLC16A11Q8NCK7 471 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 CYGBQ8WWM9 190 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 GEMIN6Q8WXD5 167 aaKnown RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 SDCCAG3Q96C92 435 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 SLC35A4Q96G79 324 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 COL21A1Q96P44 957 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 MBOAT4Q96T53 435 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 RBM4BQ9BQ04 359 aaKnown RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 DUSP23Q9BVJ7 150 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 RBM4Q9BWF3 364 aaKnown RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 ACTRT3Q9BYD9 372 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 GABARAPL1Q9H0R8 117 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 BCL2L10Q9HD36 194 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 DNAAF2Q9NVR5 837 aaKnown RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 IRAK4Q9NWZ3 460 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 MAT2BQ9NZL9 334 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 PTGFRNQ9P2B2 879 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 BAG5Q9UL15 447 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 C19orf53Q9UNZ5 99 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 SAMHD1Q9Y3Z3 626 aaKnown RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 ZNF451Q9Y4E5 1061 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 A8MU76 341 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 TMEM150CB9EJG8 249 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 ASNA1O43681 348 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 HYAL3O43820 417 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 PCDHGA12O60330 932 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 SEMA7AO75326 666 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 CDC123O75794 336 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 EPPINO95925 133 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 FESP07332 822 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 FPR1P21462 350 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 MYF6P23409 242 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 RRM2P31350 389 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 CAPGP40121 348 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 XCR1P46094 333 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 GCGRP47871 477 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 KCNJ5P48544 419 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 EXOSC6Q5RKV6 272 aaKnown RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 PRAMEF17Q5VTA0 474 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 ZNF574Q6ZN55 896 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 USP51Q70EK9 711 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 PRSS42Q7Z5A4 293 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 CYP4Z1Q86W10 505 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 DHRSXQ8N5I4 330 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 OR4D11Q8NGI4 311 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 OR1L3Q8NH93 324 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 CTHRC1Q96CG8 243 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 MMABQ96EY8 250 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 TOR3AQ9H497 397 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 IFT80Q9P2H3 777 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 ATXN7L1Q9ULK2 861 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 TESMINQ9Y4I5 508 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 LYVE1Q9Y5Y7 322 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 TTC28Q96AY4 2481 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 TMEM247A6NEH6 219 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 PLOD3O60568 738 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 OR2B3O76000 313 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 PDE9AO76083 593 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 H6PDO95479 791 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 NT5EP21589 574 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 PPP2R1BP30154 601 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 PIGAP37287 484 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 DAPP51397 102 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 CRISP3P54108 245 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 BTG2P78543 158 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 GRM7Q14831 915 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 CDC73Q6P1J9 531 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 OFCC1Q8IZS5 231 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 OR6C4Q8NGE1 309 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF675Q8TD23 568 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 EPYCQ99645 322 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 QRSL1Q9H0R6 528 aaKnown RBP12.89□□□□□ -0.35
PTPRF-202ENST00000372405 SLC38A1Q9H2H9 487 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 REEP1Q9H902 201 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 A0A087WV62 115 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 A0A1W2PQM1 296 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 CPED1A4D0V7 1026 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 FFAR1O14842 300 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 HS6ST1O60243 411 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 MITFO75030 526 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-202ENST00000372405 JRKO75564 520 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 SLC35E2P0CK97 266 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 ACP2P11117 423 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 PNLIPP16233 465 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 ANXA11P50995 505 aaKnown RBP12.89□□□□□ -0.35
PTPRF-202ENST00000372405 EMP3P54852 163 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 DUSP8Q13202 625 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 EXOSC7Q15024 291 aaKnown RBP12.89□□□□□ -0.35
PTPRF-202ENST00000372405 NR0B2Q15466 257 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 DUSP5Q16690 384 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms