RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RB1P06400 928 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 SRPRAP08240 638 aaKnown RBP11.46□□□□□ -0.57
CLIP3-201ENST00000360535 CD8BP10966 210 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 CELP19835 753 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 PPP2R1BP30154 601 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 CLCNKAP51800 687 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 LIMK1P53667 647 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 TAS2R41P59536 307 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF791Q3KP31 576 aaPredicted RBP11.46□□□□□ -0.57
CLIP3-201ENST00000360535 SAXO2Q658L1 398 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 SLC30A6Q6NXT4 461 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 SYCE2Q6PIF2 218 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 GRASPQ7Z6J2 395 aaPredicted RBP11.46□□□□□ -0.57
CLIP3-201ENST00000360535 SLC30A8Q8IWU4 369 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 C19orf18Q8NEA5 215 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 UBE2E3Q969T4 207 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 NXPE3Q969Y0 559 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 ARRDC3Q96B67 414 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 FAM46AQ96IP4 442 aaKnown RBP11.46□□□□□ -0.57
CLIP3-201ENST00000360535 KCTD7Q96MP8 289 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF582Q96NG8 517 aaPredicted RBP11.46□□□□□ -0.57
CLIP3-201ENST00000360535 OR2B2Q9GZK3 357 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 SLC22A4Q9H015 551 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 A4GNTQ9UNA3 340 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 CLCA2Q9UQC9 943 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 KCNE3Q9Y6H6 103 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 OBSL1O75147 1896 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 TSC22D2O75157 780 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 PDE9AO76083 593 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 TBX6O95947 436 aaPredicted RBP11.46□□□□□ -0.58
CLIP3-201ENST00000360535 ADH1AP07327 375 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 MSL3P1P0C860 447 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 HOXB3P14651 431 aaPredicted RBP11.46□□□□□ -0.58
CLIP3-201ENST00000360535 ERVFC1P60507 584 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 FLYWCH1Q4VC44 716 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 DDI2Q5TDH0 399 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 TRIQKQ629K1 86 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 PROKR2Q8NFJ6 384 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 LILRB4Q8NHJ6 448 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 CHAC2Q8WUX2 184 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 ZBED6CLQ96FA7 236 aaPredicted RBP11.46□□□□□ -0.58
CLIP3-201ENST00000360535 CITED4Q96RK1 184 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 DPH7Q9BTV6 452 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 IMP3Q9NV31 184 aaKnown RBP11.46□□□□□ -0.58
CLIP3-201ENST00000360535 NLKQ9UBE8 527 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 P2RX2Q9UBL9 471 aa11.46□□□□□ -0.58
CLIP3-201ENST00000360535 RANBP2P49792 3224 aaKnown RBP11.46□□□□□ -0.58
CLIP3-201ENST00000360535 CCNYL3P0C7X3 344 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 VIPR2P41587 438 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 SLC6A11P48066 632 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 SNRPGP62308 76 aaKnown RBP11.45□□□□□ -0.58
CLIP3-201ENST00000360535 KRT33BQ14525 404 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 P2RY14Q15391 338 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 NDUFA5Q16718 116 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 NDUFAF5Q5TEU4 345 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 ZNF57Q68EA5 555 aaPredicted RBP11.45□□□□□ -0.58
CLIP3-201ENST00000360535 UNC5DQ6UXZ4 953 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 ZNF730Q6ZMV8 503 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 AMZ2Q86W34 360 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 TEX47Q8TBZ9 253 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 LGR4Q9BXB1 951 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 SIRT3Q9NTG7 399 aaPredicted RBP11.45□□□□□ -0.58
CLIP3-201ENST00000360535 NDUFB11Q9NX14 153 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 KCND3Q9UK17 655 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 CLEC4AQ9UMR7 237 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 NDRG2Q9UN36 371 aaKnown RBP11.45□□□□□ -0.58
CLIP3-201ENST00000360535 SLC9A8Q9Y2E8 581 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 IRAK3Q9Y616 596 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 FAM183AA6NL82 134 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 FAM25AB3EWG3 89 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 FAM25CB3EWG5 89 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 FAM25GB3EWG6 89 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 SLC30A4O14863 429 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 BSGP35613 385 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 GPR4P46093 362 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 SLC16A1P53985 500 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 RAB8AP61006 207 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 MLLT11Q13015 90 aaPredicted RBP11.45□□□□□ -0.58
CLIP3-201ENST00000360535 QPRTQ15274 297 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 ARHGAP15Q53QZ3 475 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 RNASE12Q5GAN4 147 aaKnown RBP11.45□□□□□ -0.58
CLIP3-201ENST00000360535 PLET1Q6UQ28 207 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 TMEM107Q6UX40 140 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 OR8K5Q8NH50 307 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 CREB3L4Q8TEY5 395 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 KAT2AQ92830 837 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 TP53INP1Q96A56 240 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 FERD3LQ96RJ6 166 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 DCLRE1CQ96SD1 692 aaKnown RBP11.45□□□□□ -0.58
CLIP3-201ENST00000360535 GLIPR2Q9H4G4 154 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 KLHL31Q9H511 634 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 RPRD1BQ9NQG5 326 aaKnown RBP11.45□□□□□ -0.58
CLIP3-201ENST00000360535 PCDHGB2Q9Y5G2 931 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 SPTBP11277 2137 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 PRRT4C9JH25 899 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 PGRMC2O15173 223 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 PCDH8O95206 1070 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 CXCL10P02778 98 aa11.45□□□□□ -0.58
CLIP3-201ENST00000360535 SLC2A2P11168 524 aaPredicted RBP11.45□□□□□ -0.58
CLIP3-201ENST00000360535 ETV6P41212 452 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms