RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CDNFQ49AH0 187 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 GTF2H4Q92759 462 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 FKBP10Q96AY3 582 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 DGAT2Q96PD7 388 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 SLAMF8Q9P0V8 285 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 KLHL9Q9P2J3 617 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 GMPR2Q9P2T1 348 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 ZNF726A6NNF4 738 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 ALDOBP05062 364 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 MPC1LP0DKB6 136 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 S1PR1P21453 382 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 TUBG1P23258 451 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 ATAD3CQ5T2N8 411 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 GALNT7Q86SF2 657 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 ANKK1Q8NFD2 765 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 WFIKKN2Q8TEU8 576 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 THAP4Q8WY91 577 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 MUL1Q969V5 352 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 F2RL3Q96RI0 385 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 MROQ9BYG7 248 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 RDH14Q9HBH5 336 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 UBFD1O14562 309 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 VEZF1Q14119 521 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 OR4E2Q8NGC2 313 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 C7orf50Q9BRJ6 194 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 ZNF649Q9BS31 505 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 ARHGAP39Q9C0H5 1083 aa18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 PNO1Q9NRX1 252 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-202ENST00000356786 GALEQ14376 348 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 RPL13AP3Q6NVV1 102 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 OR7G1Q8NGA0 311 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 OR52P1PQ8NH57 321 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 MOAP1Q96BY2 351 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 GLS2Q9UI32 602 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 ASB4Q9Y574 426 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 CLDN24A6NM45 220 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 ALDOCP09972 364 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 ARSKQ6UWY0 536 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 ZNF551Q7Z340 670 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 NUP43Q8NFH3 380 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 MYNNQ9NPC7 610 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 CACNG2Q9Y698 323 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 C1orf196B1AJZ1 125 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 JRKO75564 520 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 RPS17P08708 135 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 ALDH3B2P48448 385 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 RING1Q06587 406 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 NUMA1Q14980 2115 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 TESCQ96BS2 214 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 NECAB3Q96P71 396 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 CD300AQ9UGN4 299 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 MAGEA11P43364 429 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 ZNF616Q08AN1 781 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 PIN1Q13526 163 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 METTL11BQ5VVY1 283 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 STEAP3Q658P3 488 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 OR4K14Q8NGD5 310 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 THAP7Q9BT49 309 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 BOLA1Q9Y3E2 137 aa18.61■□□□□ 0.57
CCDC88B-202ENST00000356786 KHNYNO15037 678 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 SC5DO75845 299 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 ITGAMP11215 1152 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 RNF144AP50876 292 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 TBPL1P62380 186 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 ERVK-25P63136 954 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 UGT3A2Q3SY77 523 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 NHSL2Q5HYW2 709 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 ENPP7Q6UWV6 458 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 CPNE2Q96FN4 548 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 FAM46AQ96IP4 442 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 SLC38A3Q99624 504 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 BOCQ9BWV1 1114 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 UGT2A1Q9Y4X1 527 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 NPIPA5E9PKD4 350 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 SSTR2P30874 369 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 PLEKHN1Q494U1 663 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 RNASE10Q5GAN6 216 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 WDR20Q8TBZ3 569 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 DHRS1Q96LJ7 313 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 NPIPA1Q9UND3 350 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 ADH6P28332 368 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 FLYWCH1Q4VC44 716 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 IER5LQ5T953 404 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 AADACL4Q5VUY2 407 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 ZNF280BQ86YH2 543 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 OR7G2Q8NG99 324 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 PPA2Q9H2U2 334 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 SRA1Q9HD15 236 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 TAS2R8Q9NYW2 309 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 UBR2Q8IWV8 1755 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 AP1G1O43747 822 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 B4GALT2O60909 372 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 ETV3P41162 512 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 GLP1RP43220 463 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 ACTA2P62736 377 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 ACTG2P63267 376 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 ALG10Q5BKT4 473 aa18.6■□□□□ 0.57
CCDC88B-202ENST00000356786 PM20D1Q6GTS8 502 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms