RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ADGRG4Q8IZF6 3080 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 ATP6AP2A0A1C7CYW4 349 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 E9PLN8 166 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 ZNF500O60304 480 aaPredicted RBP16.9■□□□□ 0.3
CLN3-202ENST00000355477 ATP6AP2O75787 350 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 SLU7O95391 586 aaKnown RBP16.9■□□□□ 0.3
CLN3-202ENST00000355477 CBX7O95931 251 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 ANXA4P09525 319 aaPredicted RBP16.9■□□□□ 0.3
CLN3-202ENST00000355477 RFPL3SP0C7P2 107 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 MRPS35P82673 323 aaKnown RBP16.9■□□□□ 0.3
CLN3-202ENST00000355477 PRSS53Q2L4Q9 553 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 EMC4Q5J8M3 183 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 WDR93Q6P2C0 686 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 TRIM46Q7Z4K8 759 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 LRRC25Q8N386 305 aaPredicted RBP16.9■□□□□ 0.3
CLN3-202ENST00000355477 RIBC1Q8N443 379 aaPredicted RBP16.9■□□□□ 0.3
CLN3-202ENST00000355477 FAM109AQ8N4B1 249 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 EXOSC8Q96B26 276 aaKnown RBP16.9■□□□□ 0.3
CLN3-202ENST00000355477 VKORC1Q9BQB6 163 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 ANKRA2Q9H9E1 313 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 BCAP29Q9UHQ4 241 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 TACC2O95359 2948 aa16.9■□□□□ 0.3
CLN3-202ENST00000355477 H3BQF6 201 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 CRCPO75575 148 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 IGHG3P01860 377 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 PCSK2P16519 638 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 KCNJ2P63252 427 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 NNATQ16517 81 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 BICRALQ6AI39 1079 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 CLEC6AQ6EIG7 209 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 XKRXQ6PP77 449 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 PAOXQ6QHF9 649 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 TRILQ7L0X0 811 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 MARVELD2Q8N4S9 558 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 C17orf47Q8NEP4 570 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 APOPT1Q96IL0 206 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 GATA5Q9BWX5 397 aaPredicted RBP16.89■□□□□ 0.29
CLN3-202ENST00000355477 RYDENQ9NUL5 291 aaKnown RBP16.89■□□□□ 0.29
CLN3-202ENST00000355477 MKS1Q9NXB0 559 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 LGALS13Q9UHV8 139 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 ENTPD4Q9Y227 616 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 CCL27Q9Y4X3 112 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 PTGDR2Q9Y5Y4 395 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 ARHGAP21Q5T5U3 1957 aa16.89■□□□□ 0.29
CLN3-202ENST00000355477 MED12Q93074 2177 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 LRRC3CA6NJW4 275 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 NPIPA2E9PIF3 369 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 NPIPA3F8WFD2 350 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 TRIM13O60858 407 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 SPAG7O75391 227 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 NME6O75414 186 aaPredicted RBP16.88■□□□□ 0.29
CLN3-202ENST00000355477 UROSP10746 265 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 AGAP20933 346 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 ABCD3P28288 659 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 HTR1EP28566 365 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 EMDP50402 254 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 SMSP52788 366 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 IFFO1Q0D2I5 559 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 C2orf80Q0P641 193 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 SLC10A1Q14973 349 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 HEPACAMQ14CZ8 416 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 RPS6KA2Q15349 733 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 IMPG1Q17R60 797 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 ZNF628Q5EBL2 1059 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 DESI1Q6ICB0 168 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 EMBQ6PCB8 327 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 SRRM1Q8IYB3 904 aaKnown RBP16.88■□□□□ 0.29
CLN3-202ENST00000355477 OR52R1Q8NGF1 315 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 OR9A2Q8NGT5 310 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.88■□□□□ 0.29
CLN3-202ENST00000355477 PHF10Q8WUB8 498 aaKnown RBP16.88■□□□□ 0.29
CLN3-202ENST00000355477 DIO2Q92813 273 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 KAT2AQ92830 837 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 CAVIN3Q969G5 261 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 FAM111AQ96PZ2 611 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 ITPAQ9BY32 194 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 ZFP64Q9NPA5 681 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 PFDN4Q9NQP4 134 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 SLC35C2Q9NQQ7 365 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 SLC17A7Q9P2U7 560 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 TNFRSF10DQ9UBN6 386 aa16.88■□□□□ 0.29
CLN3-202ENST00000355477 KLF2Q9Y5W3 355 aaPredicted RBP16.88■□□□□ 0.29
CLN3-202ENST00000355477 A0A1B0GVC2 190 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 ANKRD33BA6NCL7 494 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 CAPN14A8MX76 684 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 TP53I11O14683 189 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 TRIM3O75382 744 aaPredicted RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 ABCB1P08183 1280 aaPredicted RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 CREB1P16220 341 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 ALDH3A1P30838 453 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 NRG3P56975 720 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 CEBPEQ15744 281 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 ZNF630Q2M218 657 aaPredicted RBP16.87■□□□□ 0.29
CLN3-202ENST00000355477 ERCC6LQ2NKX8 1250 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 GXYLT1Q4G148 440 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 FAM71E1Q6IPT2 247 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 SLC34A3Q8N130 599 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 RPRMLQ8N4K4 120 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 OR5M9Q8NGP3 310 aa16.87■□□□□ 0.29
CLN3-202ENST00000355477 CDC26Q8NHZ8 85 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms