RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SSX1Q16384 188 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 GPAT3Q53EU6 434 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 C19orf48Q6RUI8 117 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 IQCF1Q8N6M8 205 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 OR4K5Q8NGD3 323 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 OR8J1Q8NGP2 316 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 SFXN5Q8TD22 340 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 C16orf58Q96GQ5 468 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 TRMT61BQ9BVS5 477 aaKnown RBP20.53■□□□□ 0.88
SHMT1-202ENST00000352886 QRSL1Q9H0R6 528 aaKnown RBP20.53■□□□□ 0.88
SHMT1-202ENST00000352886 ABCB10Q9NRK6 738 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 MAN2C1Q9NTJ4 1040 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 SCN3AQ9NY46 2000 aa20.52■□□□□ 0.88
SHMT1-202ENST00000352886 PLRG1O43660 514 aaKnown RBP20.52■□□□□ 0.88
SHMT1-202ENST00000352886 UPK1BO75841 260 aa20.52■□□□□ 0.88
SHMT1-202ENST00000352886 MMP11P24347 488 aa20.52■□□□□ 0.88
SHMT1-202ENST00000352886 ANXA11P50995 505 aaKnown RBP20.52■□□□□ 0.88
SHMT1-202ENST00000352886 TIMM50Q3ZCQ8 353 aa20.52■□□□□ 0.88
SHMT1-202ENST00000352886 SLC22A16Q86VW1 577 aa20.52■□□□□ 0.88
SHMT1-202ENST00000352886 SLC34A3Q8N130 599 aa20.52■□□□□ 0.88
SHMT1-202ENST00000352886 CYP4Z2PQ8N1L4 340 aa20.52■□□□□ 0.88
SHMT1-202ENST00000352886 FGF14Q92915 247 aa20.52■□□□□ 0.88
SHMT1-202ENST00000352886 SLC6A18Q96N87 628 aa20.52■□□□□ 0.88
SHMT1-202ENST00000352886 RPP25Q9BUL9 199 aaKnown RBP20.52■□□□□ 0.88
SHMT1-202ENST00000352886 TVP23BQ9NYZ1 205 aa20.52■□□□□ 0.88
SHMT1-202ENST00000352886 CLEC2DQ9UHP7 191 aa20.52■□□□□ 0.88
SHMT1-202ENST00000352886 TAF4O00268 1085 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 SLC31A1O15431 190 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 LGI1O95970 557 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 CKMT1AP12532 417 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 CSTF2P33240 577 aaKnown RBP eCLIP20.52■□□□□ 0.87
SHMT1-202ENST00000352886 S100A5P33763 92 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 KIR2DL1P43626 348 aaPredicted RBP20.52■□□□□ 0.87
SHMT1-202ENST00000352886 TCEA2Q15560 299 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 PARM1Q6UWI2 310 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 ZER1Q7Z7L7 766 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 IQCHQ86VS3 1027 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 OPALINQ96PE5 141 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 MYADMQ96S97 322 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 TAPBPLQ9BX59 468 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 FGF22Q9HCT0 170 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 KCNE3Q9Y6H6 103 aa20.52■□□□□ 0.87
SHMT1-202ENST00000352886 K7EQS6 105 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 KCNJ13O60928 360 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 FHP07954 510 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 ZNF91Q05481 1191 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 INAVAQ3KP66 663 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 C9orf50Q5SZB4 431 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 MEDAGQ5VYS4 303 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 SLC48A1Q6P1K1 146 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TUBA3EQ6PEY2 450 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TMEM80Q96HE8 168 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 ANKRA2Q9H9E1 313 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 DZANK1Q9NVP4 752 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 APOBEC3BQ9UH17 382 aaKnown RBP20.51■□□□□ 0.87
SHMT1-202ENST00000352886 RPL36Q9Y3U8 105 aaKnown RBP20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TBC1D3DA0A087WVF3 549 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TBC1D3IA0A087WXS9 549 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TBC1D3EA0A087X179 549 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TBC1D3KA0A087X1G2 549 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TBC1D3FA6NER0 549 aaPredicted RBP20.51■□□□□ 0.87
SHMT1-202ENST00000352886 ISM1B1AKI9 464 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TBC1D3LB9A6J9 549 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TBC1D3HP0C7X1 549 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 CMPK1P30085 196 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 RHAGQ02094 409 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 GNA13Q14344 377 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 MFSD4BQ5TF39 518 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TBC1D3GQ6DHY5 549 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TBC1D3CQ6IPX1 549 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TBC1D3Q8IZP1 549 aaPredicted RBP20.51■□□□□ 0.87
SHMT1-202ENST00000352886 OR56A1Q8NGH5 318 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 PRRC1Q96M27 445 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 EQTNQ9NQ60 294 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 GIN1Q9NXP7 522 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 CES1P1Q9UKY3 287 aa20.51■□□□□ 0.87
SHMT1-202ENST00000352886 YBX2Q9Y2T7 364 aaKnown RBP20.51■□□□□ 0.87
SHMT1-202ENST00000352886 LSM2Q9Y333 95 aaKnown RBP20.51■□□□□ 0.87
SHMT1-202ENST00000352886 TBX1O43435 398 aa20.5■□□□□ 0.87
SHMT1-202ENST00000352886 F3P13726 295 aa20.5■□□□□ 0.87
SHMT1-202ENST00000352886 CSNK2A2P19784 350 aaPredicted RBP20.5■□□□□ 0.87
SHMT1-202ENST00000352886 MAN2A2P49641 1150 aa20.5■□□□□ 0.87
SHMT1-202ENST00000352886 ADPRHP54922 357 aa20.5■□□□□ 0.87
SHMT1-202ENST00000352886 ALDH6A1Q02252 535 aaKnown RBP20.5■□□□□ 0.87
SHMT1-202ENST00000352886 LYSMD2Q8IV50 215 aa20.5■□□□□ 0.87
SHMT1-202ENST00000352886 SARGQ9BW04 601 aa20.5■□□□□ 0.87
SHMT1-202ENST00000352886 TSSK6Q9BXA6 273 aa20.5■□□□□ 0.87
SHMT1-202ENST00000352886 C1QTNF7Q9BXJ2 289 aa20.5■□□□□ 0.87
SHMT1-202ENST00000352886 MYO9BQ13459 2157 aa20.5■□□□□ 0.87
SHMT1-202ENST00000352886 A0A0G2JPF8 293 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 HNRNPCL2B2RXH8 293 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 HNRNPCL3B7ZW38 293 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 TLX2O43763 284 aaPredicted RBP20.49■□□□□ 0.87
SHMT1-202ENST00000352886 PRKYO43930 277 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 CSO75390 466 aaKnown RBP20.49■□□□□ 0.87
SHMT1-202ENST00000352886 DNTTP04053 509 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 SCG5P05408 212 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 ASGR2P07307 311 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 HNRNPCL4P0DMR1 293 aa20.49■□□□□ 0.87
SHMT1-202ENST00000352886 SOX3P41225 446 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms