RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SRMSQ9H3Y6 488 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 ABCB10Q9NRK6 738 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 IRAK4Q9NWZ3 460 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 TRNAU1APQ9NX07 287 aaKnown RBP9.75□□□□□ -0.85
LIMA1-201ENST00000341247 IL20RAQ9UHF4 553 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 TICRRQ7Z2Z1 1910 aa9.75□□□□□ -0.85
LIMA1-201ENST00000341247 CLDN24A6NM45 220 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 CPSF4LA6NMK7 179 aaKnown RBP9.74□□□□□ -0.85
LIMA1-201ENST00000341247 ZAR1LA6NP61 321 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 WWP2O00308 870 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 PLRG1O43660 514 aaKnown RBP9.74□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF888P0CJ79 500 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-201ENST00000341247 PVRP15151 417 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 CMPK1P30085 196 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 SOX3P41225 446 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 SEPHS1P49903 392 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 ALDH6A1Q02252 535 aaKnown RBP9.74□□□□□ -0.85
LIMA1-201ENST00000341247 CHRNEQ04844 493 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 TBCEQ15813 527 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-201ENST00000341247 CLEC12AQ5QGZ9 265 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 PGBD2Q6P3X8 592 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 MTSS1LQ765P7 747 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 KRT73Q86Y46 540 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 OR2L5Q8NG80 312 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 OR4K5Q8NGD3 323 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 SLC9A6Q92581 669 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 GPA33Q99795 319 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 SLIRPQ9GZT3 109 aaKnown RBP9.74□□□□□ -0.85
LIMA1-201ENST00000341247 AKIP1Q9NQ31 210 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 TMEM74BQ9NUR3 256 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 MKLN1Q9UL63 735 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 A4GNTQ9UNA3 340 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 GPR52Q9Y2T5 361 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 GPR55Q9Y2T6 319 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-201ENST00000341247 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-201ENST00000341247 A0A1W2PQF6 199 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 EPPINO95925 133 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 OSMP13725 252 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 ELOAQ14241 798 aaKnown RBP9.74□□□□□ -0.85
LIMA1-201ENST00000341247 OR6Q1Q8NGQ2 317 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 ACSS1Q9NUB1 689 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-201ENST00000341247 WDR70Q9NW82 654 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 REV1Q9UBZ9 1251 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 PCDHGA4Q9Y5G9 962 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 E9PQ18 207 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 FCMRO60667 390 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 ACADMP11310 421 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 DRD2P14416 443 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 MAGEA10P43363 369 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-201ENST00000341247 RFX3P48380 749 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 CD300CQ08708 224 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 MADCAM1Q13477 382 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 CARTPTQ16568 116 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 PRRT3Q5FWE3 981 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 TBC1D19Q8N5T2 526 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 FAM46DQ8NEK8 389 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 NUP43Q8NFH3 380 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 BTBD2Q9BX70 525 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 DZANK1Q9NVP4 752 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 CNIH4Q9P003 139 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF624Q9P2J8 865 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-201ENST00000341247 KCND3Q9UK17 655 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 IFT52Q9Y366 437 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 AP1M2Q9Y6Q5 423 aa9.74□□□□□ -0.85
LIMA1-201ENST00000341247 CH25HO95992 272 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF12P17014 697 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 CSNK2A2P19784 350 aaPredicted RBP9.73□□□□□ -0.85
LIMA1-201ENST00000341247 MMP11P24347 488 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 FRKP42685 505 aaPredicted RBP9.73□□□□□ -0.85
LIMA1-201ENST00000341247 RGS6P49758 472 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 KHKP50053 298 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 CSNK2BP67870 215 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 DMPKQ09013 629 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 SHFQ7M4L6 423 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 SLC46A3Q7Z3Q1 461 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 ZER1Q7Z7L7 766 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF554Q86TJ5 538 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 SLC30A8Q8IWU4 369 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 MGLLQ99685 303 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 MCOLN1Q9GZU1 580 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 DSN1Q9H410 356 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 EGLN3Q9H6Z9 239 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 SLC13A4Q9UKG4 626 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 SLC9A8Q9Y2E8 581 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 FUOMA2VDF0 154 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 SMIM30A4D0T7 59 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 RPLP0P05388 317 aaKnown RBP9.73□□□□□ -0.85
LIMA1-201ENST00000341247 ZIC1Q15915 447 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF311Q5JNZ3 666 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 CCNJQ5T5M9 372 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 C16orf62Q7Z3J2 963 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 TTLQ8NG68 377 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 OR7D2Q96RA2 312 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 KCNS3Q9BQ31 491 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 C1QTNF7Q9BXJ2 289 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 NT5DC2Q9H857 520 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 PLCXD1Q9NUJ7 323 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 ADAM29Q9UKF5 820 aa9.73□□□□□ -0.85
LIMA1-201ENST00000341247 GPC6Q9Y625 555 aaPredicted RBP9.73□□□□□ -0.85
LIMA1-201ENST00000341247 LRRTM2O43300 516 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms