RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 RORCP51449 518 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 PGDP52209 483 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 ATP12AP54707 1039 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 FCHO2Q0JRZ9 810 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 SEC23BQ15437 767 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 PIP5KL1Q5T9C9 394 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 CBARPQ8N350 705 aaPredicted RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 SLC7A13Q8TCU3 470 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 SERHL2Q9H4I8 314 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 MCUBQ9NWR8 336 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 FBXL12Q9NXK8 326 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 PSORS1C1Q9UIG5 152 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 NDRG4Q9ULP0 352 aaKnown RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 CFL2Q9Y281 166 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 J3QLW9 94 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 QSOX1O00391 747 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 SLC30A4O14863 429 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 NUPL2O15504 423 aaKnown RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 INHBBP09529 407 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 FURINP09958 794 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 ZNF19P17023 458 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 APEX1P27695 318 aaKnown RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 ZNF91Q05481 1191 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 GXYLT1Q4G148 440 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 LRIF1Q5T3J3 769 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 ZNF783Q6ZMS7 281 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 SYT9Q86SS6 491 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 LYSMD2Q8IV50 215 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 ATP6V1C2Q8NEY4 427 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 OR6T1Q8NGN1 323 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 OR8K3Q8NH51 312 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 DYNC2LI1Q8TCX1 351 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 ZNF486Q96H40 463 aaPredicted RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 TEFMQ96QE5 360 aaKnown RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 IFT27Q9BW83 186 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 ING3Q9NXR8 418 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 QPCTLQ9NXS2 382 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 MRPL39Q9NYK5 338 aaKnown RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 USP36Q9P275 1121 aaKnown RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 TDRD15B5MCY1 1934 aaKnown RBP11.3□□□□□ -0.6
USP1-201ENST00000339950 C12orf71A8MTZ7 269 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 FAM47E-STBD1D6RA91 191 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 PLPP1O14494 284 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 LCMT2O60294 686 aaKnown RBP11.3□□□□□ -0.6
USP1-201ENST00000339950 GPX5O75715 221 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 IFNA16P05015 189 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 ASGR2P07307 311 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 MPC1LP0DKB6 136 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 PCMT1P22061 227 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 CST5P28325 142 aaPredicted RBP11.3□□□□□ -0.6
USP1-201ENST00000339950 SCN1BQ07699 218 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 ZNF234Q14588 700 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 ARTNQ5T4W7 220 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 IRAK1BP1Q5VVH5 260 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 ABI3BPQ7Z7G0 1075 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 GALNT13Q8IUC8 556 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 NRMQ8IXM6 262 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 IZUMO1Q8IYV9 350 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 OR6K6Q8NGW6 343 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 RGMAQ96B86 450 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 ZNF689Q96CS4 500 aaPredicted RBP11.3□□□□□ -0.6
USP1-201ENST00000339950 COQ8BQ96D53 544 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 TMEM80Q96HE8 168 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 AKIP1Q9NQ31 210 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 ZNF226Q9NYT6 803 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 HS3ST2Q9Y278 367 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 DNAH14Q0VDD8 3507 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 HRO43593 1189 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 SSNA1O43805 119 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 TMPRSS11DO60235 418 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 LAMP2P13473 410 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 CXCR2P25025 360 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 GDI1P31150 447 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 NAA10P41227 235 aaPredicted RBP11.3□□□□□ -0.6
USP1-201ENST00000339950 HMGB4Q8WW32 186 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 BADQ92934 168 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 FYTTD1Q96QD9 318 aaKnown RBP11.3□□□□□ -0.6
USP1-201ENST00000339950 DPEP2Q9H4A9 486 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 PLSCR3Q9NRY6 295 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 ACER3Q9NUN7 267 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 TAAR2Q9P1P5 351 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 MUTYHQ9UIF7 546 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 CEP250Q9BV73 2442 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 CAPN5O15484 640 aaPredicted RBP11.3□□□□□ -0.6
USP1-201ENST00000339950 OR10H2O60403 315 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 LDB3O75112 727 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 RPP14O95059 124 aaKnown RBP11.3□□□□□ -0.6
USP1-201ENST00000339950 ITGAMP11215 1152 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 LIM2P55344 173 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 RAE1P78406 368 aaKnown RBP11.3□□□□□ -0.6
USP1-201ENST00000339950 CHRNEQ04844 493 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 KEAP1Q14145 624 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 SYT6Q5T7P8 510 aaPredicted RBP11.3□□□□□ -0.6
USP1-201ENST00000339950 NXNL2Q5VZ03 156 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 PJA1Q8NG27 643 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 HRASLS5Q96KN8 279 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 MCHR1Q99705 422 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 P2RX2Q9UBL9 471 aa11.3□□□□□ -0.6
USP1-201ENST00000339950 RPL36Q9Y3U8 105 aaKnown RBP11.3□□□□□ -0.6
USP1-201ENST00000339950 PCYT1BQ9Y5K3 369 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms