RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ARHGAP1Q07960 439 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 RAB40BQ12829 278 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 KIAA1211LQ6NV74 962 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 AGPAT4Q9NRZ5 378 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 NLKQ9UBE8 527 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 WNT10BO00744 389 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 AVPI1Q5T686 147 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 CD300LGQ6UXG3 332 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 GPR142Q7Z601 462 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 TMEM200AQ86VY9 491 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF417Q8TAU3 575 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 ZDHHC1Q8WTX9 485 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 CHTF18Q8WVB6 975 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 NOTCH3Q9UM47 2321 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 H7C1Q1 480 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 BCAS1O75363 584 aaPredicted RBP13.66□□□□□ -0.22
COL7A1-201ENST00000328333 ZBTB48P10074 688 aaPredicted RBP13.66□□□□□ -0.22
COL7A1-201ENST00000328333 AKR1C4P17516 323 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 PYCR1P32322 319 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 ARL2P36404 184 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 LEPRP48357 1165 aaKnown RBP13.66□□□□□ -0.22
COL7A1-201ENST00000328333 SIRPB2Q5JXA9 342 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 PLAG1Q6DJT9 500 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 HAS2Q92819 552 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 LIN28AQ9H9Z2 209 aaKnown RBP13.66□□□□□ -0.22
COL7A1-201ENST00000328333 HMX1Q9NP08 348 aaPredicted RBP13.66□□□□□ -0.22
COL7A1-201ENST00000328333 PKLRP30613 574 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 SERINC3Q13530 473 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 ADGRF1Q5T601 910 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 OR4F3Q6IEY1 312 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 LACC1Q8IV20 430 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 OR4K17Q8NGC6 315 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 ERVK-18Q9QC07 812 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 LOC285095A0A1B0GVY8 99 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 NPIPA7E9PJI5 369 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 NPIPA8P0DM63 369 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 BPIP17213 487 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 CD9P21926 228 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 GABRR2P28476 465 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 SCAPQ12770 1279 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 PCGF3Q3KNV8 242 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 TMEM35AQ53FP2 167 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 SPANXN4Q5MJ08 99 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 CYS1Q717R9 158 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 TM9SF4Q92544 642 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 OR52A5Q9H2C5 316 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 KCNIP2Q9NS61 270 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 CNOT2Q9NZN8 540 aaKnown RBP13.66□□□□□ -0.22
COL7A1-201ENST00000328333 PPP3CBP16298 524 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 AGXTP21549 392 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF425Q6IV72 752 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 TDP1Q9NUW8 608 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 TMEM248Q9NWD8 314 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 TJP1Q07157 1748 aa13.66□□□□□ -0.22
COL7A1-201ENST00000328333 MEIOCA2RUB1 952 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 BTBD17A6NE02 478 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 DCNP07585 359 aaKnown RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 MMP3P08254 477 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 MAP2K4P45985 399 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 SMIM15Q7Z3B0 74 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 TPRA1Q86W33 373 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 OR2T4Q8NH00 348 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 OR5AK3PQ8NH89 298 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 NANPQ8TBE9 248 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 TRMT61BQ9BVS5 477 aaKnown RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 MIR1-1HGQ9H1L0 117 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 NFS1Q9Y697 457 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 EDDM13A0A1B0GTR0 161 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 TP53I11O14683 189 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 VILLO15195 856 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 OGDHQ02218 1023 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 RBMS2Q15434 407 aaKnown RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 ERN2Q76MJ5 926 aaKnown RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 C1orf127Q8N9H9 656 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 ZFP37Q9Y6Q3 630 aaPredicted RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 A0A1B0GVT2 93 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 EOMESO95936 686 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 GJB1P08034 283 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 RAB35Q15286 201 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 HIST2H3AQ71DI3 136 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 OR10R2Q8NGX6 335 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 HERVK_113Q902F9 699 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 IL12RB2Q99665 862 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 ZBTB20Q9HC78 741 aaPredicted RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 OARD1Q9Y530 152 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 IL1AP01583 271 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 GKP32189 559 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 DAOAP59103 153 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 HBG1P69891 147 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 HBG2P69892 147 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 SLC25A11Q02978 314 aaKnown RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 C6orf136Q5SQH8 315 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 ASRGL1Q7L266 308 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 FAM83FQ8NEG4 500 aaPredicted RBP13.65□□□□□ -0.22
COL7A1-201ENST00000328333 OR14C36Q8NHC7 312 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 HOXD1Q9GZZ0 328 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 LHPPQ9H008 270 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 SMCO4Q9NRQ5 59 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 TIAM2Q8IVF5 1701 aa13.65□□□□□ -0.22
COL7A1-201ENST00000328333 GAPDHSO14556 408 aaPredicted RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms