RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 OR8J2Q8NGG1 315 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 ASB12Q8WXK4 309 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 ZNF689Q96CS4 500 aaPredicted RBP18.37■□□□□ 0.53
USP48-201ENST00000308271 GJD2Q9UKL4 321 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 TNFRSF10AO00220 468 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 EMC8O43402 210 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 ALX3O95076 343 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 IL1RNP18510 177 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 MLLT3P42568 568 aaPredicted RBP18.37■□□□□ 0.53
USP48-201ENST00000308271 BTN3A2P78410 334 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 ZNF615Q8N8J6 731 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 KREMEN2Q8NCW0 462 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 TRMT10AQ8TBZ6 339 aaKnown RBP18.37■□□□□ 0.53
USP48-201ENST00000308271 CYB5D2Q8WUJ1 264 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 F2RL3Q96RI0 385 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 TNFRSF12AQ9NP84 129 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 THSD1Q9NS62 852 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 TEX28O15482 410 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 KCNK5O95279 499 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 RLN2P04090 185 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 TAP2Q03519 686 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 AQP6Q13520 282 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 GGTA1PQ4G0N0 100 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 RIMKLAQ8IXN7 391 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 KCNK12Q9HB15 430 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 KLHL21Q9UJP4 597 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 PLAGL1Q9UM63 463 aa18.37■□□□□ 0.53
USP48-201ENST00000308271 LOXHD1Q8IVV2 1947 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 DISC1C4P0D8 188 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 HPGDSO60760 199 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 PRAF2O60831 178 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 GIMD1P0DJR0 217 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 DRD5P21918 477 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 SFRP4Q6FHJ7 346 aaPredicted RBP18.36■□□□□ 0.53
USP48-201ENST00000308271 TSNAXQ99598 290 aaKnown RBP18.36■□□□□ 0.53
USP48-201ENST00000308271 PLAC1Q9HBJ0 212 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 TRBV23OR9-2A0A075B6M9 112 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 STK19P49842 368 aaPredicted RBP18.36■□□□□ 0.53
USP48-201ENST00000308271 FAPQ12884 760 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 HACD4Q5VWC8 232 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 SLC22A15Q8IZD6 547 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 SLC7A6Q92536 515 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 FBXO9Q9UK97 447 aaPredicted RBP18.36■□□□□ 0.53
USP48-201ENST00000308271 CSN2P05814 226 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 ZNF823P16415 610 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 RGRP47804 291 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 WDR26Q9H7D7 661 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 PADI2Q9Y2J8 665 aa18.36■□□□□ 0.53
USP48-201ENST00000308271 LOC105369274A0A096LPK9 316 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 A0A0U1RQS6 177 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 A0A1W2PPK0 400 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 B8ZZF3 427 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 KIAA0319Q5VV43 1072 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 METTL11BQ5VVY1 283 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 OR4N4Q8N0Y3 316 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 PGBD5Q8N414 524 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 GALNT11Q8NCW6 608 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 OR5J2Q8NH18 312 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 OR52P1PQ8NH57 321 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 DOK1Q99704 481 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 C7orf50Q9BRJ6 194 aaKnown RBP18.35■□□□□ 0.53
USP48-201ENST00000308271 B3GNT4Q9C0J1 378 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 DNMT3AQ9Y6K1 912 aaPredicted RBP18.35■□□□□ 0.53
USP48-201ENST00000308271 NUDT7P0C024 238 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 VAMP1P23763 118 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 AGTR1P30556 359 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 CTNNB1P35222 781 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 ACTA2P62736 377 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 ACTG2P63267 376 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 RPS26P11Q5JNZ5 115 aaPredicted RBP18.35■□□□□ 0.53
USP48-201ENST00000308271 USP51Q70EK9 711 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 C5orf34Q96MH7 638 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 NDRG4Q9ULP0 352 aaKnown RBP18.35■□□□□ 0.53
USP48-201ENST00000308271 TEX51A0A1B0GUA7 166 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 CDKN2CP42773 168 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 CLCN7P51798 805 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 IER5LQ5T953 404 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 FAAH2Q6GMR7 532 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 NADSYN1Q6IA69 706 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 SBSNQ6UWP8 590 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 NUP43Q8NFH3 380 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 FAM46AQ96IP4 442 aaKnown RBP18.35■□□□□ 0.53
USP48-201ENST00000308271 ASIC5Q9NY37 505 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 RTCAO00442 366 aaKnown RBP18.35■□□□□ 0.53
USP48-201ENST00000308271 GPX2P18283 190 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 GPR4P46093 362 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 PUM1Q14671 1186 aaKnown RBP eCLIP18.35■□□□□ 0.534e-6■□□□□ 10.9
USP48-201ENST00000308271 PSRC1Q6PGN9 363 aaPredicted RBP18.35■□□□□ 0.53
USP48-201ENST00000308271 GDPD3Q7L5L3 318 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 STX12Q86Y82 276 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 UBTD2Q8WUN7 234 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 KIAA1143Q96AT1 154 aaPredicted RBP18.35■□□□□ 0.53
USP48-201ENST00000308271 ELMOD3Q96FG2 381 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 OR5M11Q96RB7 305 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 TTTY10Q9BZA0 68 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 OR10A4Q9H209 315 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 PPA2Q9H2U2 334 aa18.35■□□□□ 0.53
USP48-201ENST00000308271 RASGRP1O95267 797 aa18.34■□□□□ 0.53
USP48-201ENST00000308271 CIDECQ96AQ7 238 aaPredicted RBP18.34■□□□□ 0.53
USP48-201ENST00000308271 OR2M2Q96R28 347 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms