RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 GSTA2P09210 222 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 LTA4HP09960 611 aaKnown RBP13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 CHMP24386 653 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 ABCD3P28288 659 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 PTPN6P29350 595 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 CRABP2P29373 138 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 BSGP35613 385 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 PIK3CGP48736 1102 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 PCYT1AP49585 367 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 AGFG1P52594 562 aaKnown RBP13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 NAGLUP54802 743 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 WIPI1Q5MNZ9 446 aaPredicted RBP13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 DCST1Q5T197 706 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 GRTP1Q5TC63 336 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 SLC30A6Q6NXT4 461 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 CAPN12Q6ZSI9 719 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 RAPH1Q70E73 1250 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 ISCA2Q86U28 154 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 CXorf67Q86X51 503 aaPredicted RBP13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 NUDT13Q86X67 352 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 P3H2Q8IVL5 708 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 TEX9Q8N6V9 391 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 ZNF615Q8N8J6 731 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 C9orf106Q8NAJ2 232 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 OR4K14Q8NGD5 310 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 DOK4Q8TEW6 326 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 NUDT8Q8WV74 236 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 WNT2BQ93097 391 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 UCN3Q969E3 161 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 ADIPOR1Q96A54 375 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 ATOH8Q96SQ7 321 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 ZNF717Q9BY31 904 aaPredicted RBP13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 TRIM31Q9BZY9 425 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 OR10A5Q9H207 317 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 GALNT8Q9NY28 637 aa13.47□□□□□ -0.25
CCDC88B-201ENST00000301897 FAM159BA6NKW6 160 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 CXorf49A8MYA2 514 aaPredicted RBP13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 H0Y3Z8 333 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 UBXN8O00124 270 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 GNB5O14775 395 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 ACOX3O15254 700 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 TMPRSS11DO60235 418 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 SMPD2O60906 423 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 PPM1BO75688 479 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 PIAS1O75925 651 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 SEMA3DO95025 777 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 ABCB1P08183 1280 aaPredicted RBP13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 C10orf62Q5T681 223 aaPredicted RBP13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 METTL2BQ6P1Q9 378 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 PRSS57Q6UWY2 283 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 ANGPTL8Q6UXH0 198 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 NUP54Q7Z3B4 507 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 ADGRE4PQ86SQ3 457 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 KRTAP1-3Q8IUG1 177 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 CREG2Q8IUH2 290 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 RNF175Q8N4F7 328 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 RHEBL1Q8TAI7 183 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 BDH2Q9BUT1 245 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 OSBPL11Q9BXB4 747 aa13.46□□□□□ -0.25
CCDC88B-201ENST00000301897 STAB1Q9NY15 2570 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 TCRBV9S1A1TA0A576 114 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 SNPHO15079 494 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 CBR3O75828 277 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 PORP16435 677 aaPredicted RBP13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 FPR1P21462 350 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 SSTR1P30872 391 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 CALCOCO2Q13137 446 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 SLMAPQ14BN4 828 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 POU4F3Q15319 338 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 FAM83EQ2M2I3 478 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 Q5PR19 223 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 PAGE2Q7Z2X7 111 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 LUZP2Q86TE4 346 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 YRDCQ86U90 279 aaKnown RBP13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 CTAGE3PQ8IX95 158 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 SIMC1Q8NDZ2 872 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 ZNF592Q92610 1267 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 COX4I2Q96KJ9 171 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 SERPINI1Q99574 410 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 TUBA1CQ9BQE3 449 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 OR2B2Q9GZK3 357 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 SAYSD1Q9NPB0 183 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 ADAM29Q9UKF5 820 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 PACSIN3Q9UKS6 424 aa13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 EXO1Q9UQ84 846 aaKnown RBP13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 TNPO3Q9Y5L0 923 aaKnown RBP13.45□□□□□ -0.26
CCDC88B-201ENST00000301897 GOLGA6L10A6NI86 522 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 WASHC1A8K0Z3 465 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 A8MXE2 369 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 MSTNO14793 375 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 PGRMC2O15173 223 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 ICOSLGO75144 302 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 GUCY1B2O75343 617 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 CRHP06850 196 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 GFAPP14136 432 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 CPMP14384 443 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 GPX3P22352 226 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 PAFAH1B1P43034 410 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 XKP51811 444 aa13.44□□□□□ -0.26
CCDC88B-201ENST00000301897 ALDH18A1P54886 795 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms