RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 PFDN1O60925 122 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 SLITRK5O94991 958 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 EPPINO95925 133 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 IRF3Q14653 427 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 FBXO43Q4G163 708 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 SLX4IPQ5VYV7 408 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 HMGN2P46Q86SG4 172 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 FLVCR1-AS1Q8TAF5 88 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 ZNF681Q96N22 645 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 OR7D2Q96RA2 312 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 POLR2J3Q9H1A7 115 aaKnown RBP22.55■■□□□ 1.2
TRIM54-201ENST00000296098 HMG20AQ9NP66 347 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 F5P12259 2224 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 LRRC72A6NJI9 287 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 TOR1BO14657 336 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 NME6O75414 186 aaPredicted RBP22.55■■□□□ 1.2
TRIM54-201ENST00000296098 LGI1O95970 557 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 PTHP01270 115 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 BUD31P41223 144 aaPredicted RBP22.55■■□□□ 1.2
TRIM54-201ENST00000296098 TPMTP51580 245 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 TARDBPQ13148 414 aaKnown RBP eCLIP22.55■■□□□ 1.2
TRIM54-201ENST00000296098 TMCO5AQ8N6Q1 288 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 NUP43Q8NFH3 380 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 C9orf43Q8TAL5 461 aaPredicted RBP22.55■■□□□ 1.2
TRIM54-201ENST00000296098 ELP4Q96EB1 424 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 PRRC1Q96M27 445 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 PINK1Q9BXM7 581 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 EQTNQ9NQ60 294 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 NDOR1Q9UHB4 597 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 B3GNT3Q9Y2A9 372 aa22.55■■□□□ 1.2
TRIM54-201ENST00000296098 H3BN98 237 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 NARSO43776 548 aaKnown RBP22.54■■□□□ 1.2
TRIM54-201ENST00000296098 AIREO43918 545 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 ZNF12P17014 697 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 MAGP20916 626 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 CLK1P49759 484 aaKnown RBP22.54■■□□□ 1.2
TRIM54-201ENST00000296098 XKP51811 444 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 SRP54P61011 504 aaKnown RBP22.54■■□□□ 1.2
TRIM54-201ENST00000296098 TMEM31Q5JXX7 168 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 PODNL1Q6PEZ8 512 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 TMEM92Q6UXU6 159 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 DGLUCYQ7Z3D6 616 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 OR6T1Q8NGN1 323 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 RPLP0P6Q8NHW5 317 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 ZHX1-C8orf76Q96EF9 292 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 CRELD1Q96HD1 420 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 WDR12Q9GZL7 423 aaKnown RBP22.54■■□□□ 1.2
TRIM54-201ENST00000296098 AKIP1Q9NQ31 210 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 KCNE3Q9Y6H6 103 aa22.54■■□□□ 1.2
TRIM54-201ENST00000296098 MAGEB3O15480 346 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 ASNA1O43681 348 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 AKT2P31751 481 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 IDUAP35475 653 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 SNRPGP62308 76 aaKnown RBP22.53■■□□□ 1.2
TRIM54-201ENST00000296098 TNFRSF17Q02223 184 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 ALG11Q2TAA5 492 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 C12orf73Q69YU5 71 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 SLC46A3Q7Z3Q1 461 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 IGFN1Q86VF2 1251 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 S100ZQ8WXG8 99 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 ABTB1Q969K4 478 aaPredicted RBP22.53■■□□□ 1.2
TRIM54-201ENST00000296098 OR2A14Q96R47 310 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 ALOXE3Q9BYJ1 711 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 ROGDIQ9GZN7 287 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 IGFBP1P08833 259 aaPredicted RBP22.53■■□□□ 1.2
TRIM54-201ENST00000296098 UGT2B7P16662 529 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 GADD45AP24522 165 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 LTB4RQ15722 352 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 ZNF367Q7RTV3 350 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 LINC00471Q8N535 108 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 C10orf90Q96M02 699 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 IL4I1Q96RQ9 567 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 CDCA4Q9BXL8 241 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 MAN2C1Q9NTJ4 1040 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 PHF11Q9UIL8 331 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 PMF1-BGLAPU3KQ54 211 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 LRP4O75096 1905 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 FANCMQ8IYD8 2048 aa22.53■■□□□ 1.2
TRIM54-201ENST00000296098 TCRBV21S2A2A0A5A6 115 aa22.52■■□□□ 1.2
TRIM54-201ENST00000296098 CNOT3O75175 753 aaKnown RBP22.52■■□□□ 1.2
TRIM54-201ENST00000296098 PIPP12273 146 aaPredicted RBP22.52■■□□□ 1.2
TRIM54-201ENST00000296098 MAN2A2P49641 1150 aa22.52■■□□□ 1.2
TRIM54-201ENST00000296098 EOGTQ5NDL2 527 aa22.52■■□□□ 1.2
TRIM54-201ENST00000296098 CASP12Q6UXS9 341 aa22.52■■□□□ 1.2
TRIM54-201ENST00000296098 ZCCHC10Q8TBK6 192 aa22.52■■□□□ 1.2
TRIM54-201ENST00000296098 KAT2AQ92830 837 aa22.52■■□□□ 1.2
TRIM54-201ENST00000296098 TWSG1Q9GZX9 223 aa22.52■■□□□ 1.2
TRIM54-201ENST00000296098 C8orf33Q9H7E9 229 aaPredicted RBP22.52■■□□□ 1.2
TRIM54-201ENST00000296098 ANKRA2Q9H9E1 313 aa22.52■■□□□ 1.2
TRIM54-201ENST00000296098 TRNAU1APQ9NX07 287 aaKnown RBP22.52■■□□□ 1.2
TRIM54-201ENST00000296098 CALML5Q9NZT1 146 aa22.52■■□□□ 1.2
TRIM54-201ENST00000296098 OSGIN1Q9UJX0 560 aa22.52■■□□□ 1.2
TRIM54-201ENST00000296098 GSAPA4D1B5 854 aa22.52■■□□□ 1.19
TRIM54-201ENST00000296098 TPST2O60704 377 aa22.52■■□□□ 1.19
TRIM54-201ENST00000296098 TGFBR1P36897 503 aa22.52■■□□□ 1.19
TRIM54-201ENST00000296098 YPEL5P62699 121 aa22.52■■□□□ 1.19
TRIM54-201ENST00000296098 OLR1P78380 273 aa22.52■■□□□ 1.19
TRIM54-201ENST00000296098 TFF2Q03403 129 aa22.52■■□□□ 1.19
TRIM54-201ENST00000296098 SUZ12Q15022 739 aaKnown RBP22.52■■□□□ 1.19
TRIM54-201ENST00000296098 NDUFA9Q16795 377 aa22.52■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms