RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 RASAL1O95294 804 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 PRPS2P11908 318 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 GPX3P22352 226 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 NME2P22392 152 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 EPHA3P29320 983 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 MC3RP41968 323 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 PDE7AQ13946 482 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 NNATQ16517 81 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 FHL5Q5TD97 284 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 HLA-DQA1Q5Y7H0 255 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 FAM180AQ6UWF9 173 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 TMEM107Q6UX40 140 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 LYPD8Q6UX82 237 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 ZNF551Q7Z340 670 aaPredicted RBP12.35□□□□□ -0.43
VPS28-201ENST00000292510 MAVSQ7Z434 540 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.35□□□□□ -0.43
VPS28-201ENST00000292510 PRR22Q8IZ63 422 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 KIRREL3Q8IZU9 778 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 HORMAD2Q8N7B1 307 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 SLC22A8Q8TCC7 542 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 LRRC8CQ8TDW0 803 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 DYDC1Q8WWB3 177 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 ADIPOR1Q96A54 375 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 TMEM125Q96AQ2 219 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 MAGED4Q96JG8 741 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 AMDHD1Q96NU7 426 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 ITPAQ9BY32 194 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 ACBD3Q9H3P7 528 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 WDR55Q9H6Y2 383 aaPredicted RBP12.35□□□□□ -0.43
VPS28-201ENST00000292510 SLCO1B3Q9NPD5 702 aa12.35□□□□□ -0.43
VPS28-201ENST00000292510 INTS9Q9NV88 658 aaKnown RBP12.35□□□□□ -0.43
VPS28-201ENST00000292510 EIF3LQ9Y262 564 aaKnown RBP12.35□□□□□ -0.43
VPS28-201ENST00000292510 FLNCQ14315 2725 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 TCP11X1B4DZS4 312 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 CDK2AP1O14519 115 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 HDAC3O15379 428 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 TBX19O60806 448 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 WISP2O76076 250 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 HPCAL1P37235 193 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 UQCRFS1P47985 274 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 EMDP50402 254 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 GPR85P60893 370 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 HSPB3Q12988 150 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 MAD2L1Q13257 205 aaPredicted RBP12.34□□□□□ -0.43
VPS28-201ENST00000292510 SLC9B1Q4ZJI4 515 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 LARP4Q71RC2 724 aaKnown RBP eCLIP12.34□□□□□ -0.43
VPS28-201ENST00000292510 TMEM178AQ8NBL3 297 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 PSD4Q8NDX1 1056 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 ZNF764Q96H86 408 aaPredicted RBP12.34□□□□□ -0.43
VPS28-201ENST00000292510 BARD1Q99728 777 aaKnown RBP12.34□□□□□ -0.43
VPS28-201ENST00000292510 NXF5Q9H1B4 397 aaKnown RBP12.34□□□□□ -0.43
VPS28-201ENST00000292510 DEPPQ9NTK1 212 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 ASIC5Q9NY37 505 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 NOP53Q9NZM5 478 aaKnown RBP12.34□□□□□ -0.43
VPS28-201ENST00000292510 ATP6V1HQ9UI12 483 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 PCDHGB6Q9Y5F9 930 aa12.34□□□□□ -0.43
VPS28-201ENST00000292510 A0A0G2JMM0 328 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 A0A1W2PPB8 328 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 A0A1W2PRS3 328 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 KIR3DP1A8MWS1 328 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 G3V3Y1 287 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 ZNF195O14628 629 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 PLOD3O60568 738 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 WISP1O95388 367 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 ALDOCP09972 364 aaKnown RBP12.33□□□□□ -0.44
VPS28-201ENST00000292510 CCL3P10147 92 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 LAMP1P11279 417 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 LBPP18428 481 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 GNLYP22749 145 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 RFC3P40938 356 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 CDK9P50750 372 aaKnown RBP12.33□□□□□ -0.44
VPS28-201ENST00000292510 MRPL49Q13405 166 aaKnown RBP12.33□□□□□ -0.44
VPS28-201ENST00000292510 INAQ16352 499 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 SMU1Q2TAY7 513 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 ZNF791Q3KP31 576 aaPredicted RBP12.33□□□□□ -0.44
VPS28-201ENST00000292510 OPN5Q6U736 354 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 R3HCC1LQ7Z5L2 792 aaKnown RBP12.33□□□□□ -0.44
VPS28-201ENST00000292510 SULF2Q8IWU5 870 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 RIMKLAQ8IXN7 391 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 GPALPP1Q8IXQ4 340 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 TAGAPQ8N103 731 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 CPSF7Q8N684 471 aaKnown RBP12.33□□□□□ -0.44
VPS28-201ENST00000292510 SLC15A4Q8N697 577 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 OR5M3Q8NGP4 307 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 PIWIL2Q8TC59 973 aaKnown RBP12.33□□□□□ -0.44
VPS28-201ENST00000292510 FAR1Q8WVX9 515 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 MTERF3Q96E29 417 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 SPACA9Q96E40 222 aaPredicted RBP12.33□□□□□ -0.44
VPS28-201ENST00000292510 FOLH1BQ9HBA9 442 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 TIMMDC1Q9NPL8 285 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 AGPAT4Q9NRZ5 378 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 OLAHQ9NV23 265 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 PRODH2Q9UF12 536 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 CFL2Q9Y281 166 aa12.33□□□□□ -0.44
VPS28-201ENST00000292510 PINLYPA6NC86 204 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 ASPDHA6ND91 283 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 TRPC5OSA6NMA1 111 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 SLCO1B7G3V0H7 640 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 UPK1AO00322 258 aa12.32□□□□□ -0.44
VPS28-201ENST00000292510 PLOD2O00469 737 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms