RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 C6orf47O95873 294 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 TROVE2P10155 538 aaKnown RBP eCLIP11.81□□□□□ -0.52
SS18-202ENST00000269138 GPX3P22352 226 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 GPC1P35052 558 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 ZFP36L2P47974 494 aaKnown RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 SEC24CP53992 1094 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 ARG2P78540 354 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 NFATC3Q12968 1075 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 TUBA3CQ13748 450 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 GSTA3Q16772 222 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 FAM174BQ3ZCQ3 159 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 PIGGQ5H8A4 983 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 TUBA3EQ6PEY2 450 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 PAOXQ6QHF9 649 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 CLECL1Q8IZS7 167 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 LGI4Q8N135 537 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 ZNF441Q8N8Z8 693 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 OR9I1Q8NGQ6 314 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 ZFP28Q8NHY6 868 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 NUBPLQ8TB37 319 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 ADIPOR1Q96A54 375 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 TESCQ96BS2 214 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 TMEM120AQ9BXJ8 343 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 SDR39U1Q9NRG7 319 aaPredicted RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 SIRT3Q9NTG7 399 aaPredicted RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 ATAD3AQ9NVI7 634 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 LUZP4Q9P127 313 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 C19orf53Q9UNZ5 99 aaPredicted RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 ERVK-11Q9UQG0 969 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 A0A087WV62 115 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 C2orf92A0A1B0GVN3 265 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 DYTNA2CJ06 578 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 SCN2BO60939 215 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 SLC22A3O75751 556 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 NADKO95544 446 aaPredicted RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 CD1EP15812 388 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 DDX5P17844 614 aaKnown RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 S100A3P33764 101 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 KIR3DL1P43629 444 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 CLNS1AP54105 237 aaKnown RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 SRSF11Q05519 484 aaKnown RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 NNATQ16517 81 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 PLEKHN1Q494U1 663 aaPredicted RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 TMEM64Q6YI46 380 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 ANKRD46Q86W74 232 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 ZNF227Q86WZ6 799 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 MIER2Q8N344 545 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 OR2L13Q8N349 312 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 OR8J2Q8NGG1 315 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 STON2Q8WXE9 905 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 OR5P2Q8WZ92 322 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 TM9SF4Q92544 642 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 ERP27Q96DN0 273 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 RILPQ96NA2 401 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 SIGLEC12Q96PQ1 595 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 RASL10BQ96S79 203 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 UTP23Q9BRU9 249 aaKnown RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 ITPAQ9BY32 194 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 TRIM4Q9C037 500 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 RNF32Q9H0A6 362 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 CXorf36Q9H7Y0 433 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 ZIM2Q9NZV7 527 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 ABI3Q9P2A4 366 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 MAPRE3Q9UPY8 281 aa11.81□□□□□ -0.52
SS18-202ENST00000269138 YARS2Q9Y2Z4 477 aaKnown RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 HEMK1Q9Y5R4 338 aaPredicted RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 COPG1Q9Y678 874 aaKnown RBP11.81□□□□□ -0.52
SS18-202ENST00000269138 CNTRLQ7Z7A1 2325 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 BOD1L1Q8NFC6 3051 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 OR5H15A6NDH6 313 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 FCHO1O14526 889 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 CFLARO15519 480 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 PRAMEF2O60811 474 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 C1QL1O75973 258 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 OR6B1O95007 311 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 ABCB1P08183 1280 aaPredicted RBP11.8□□□□□ -0.52
SS18-202ENST00000269138 LSP1P33241 339 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 TRHRP34981 398 aaPredicted RBP11.8□□□□□ -0.52
SS18-202ENST00000269138 SOX3P41225 446 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 TNFSF10P50591 281 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 HLCSP50747 726 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 SSR4P51571 173 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 NR0B1P51843 470 aaKnown RBP11.8□□□□□ -0.52
SS18-202ENST00000269138 OC90Q02509 493 aaPredicted RBP11.8□□□□□ -0.52
SS18-202ENST00000269138 MLC1Q15049 377 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 HLA-DQA1Q5Y7H0 255 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 SLC6A19Q695T7 634 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 SPINK14Q6IE38 97 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 LYPD8Q6UX82 237 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 Q6ZS92 163 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 WDR53Q7Z5U6 358 aaPredicted RBP11.8□□□□□ -0.52
SS18-202ENST00000269138 TMEM156Q8N614 296 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 NATD1Q8N6N6 113 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 TEX19Q8NA77 164 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 CHMP6Q96FZ7 201 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 ZBTB18Q99592 522 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 SIKE1Q9BRV8 207 aa11.8□□□□□ -0.52
SS18-202ENST00000269138 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.8□□□□□ -0.52
SS18-202ENST00000269138 NXF5Q9H1B4 397 aaKnown RBP11.8□□□□□ -0.52
SS18-202ENST00000269138 FOLH1BQ9HBA9 442 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms