RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 OTOGLQ3ZCN5 2332 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 PRAMEF27A3QJZ7 478 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 DUXAA6NLW8 204 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 TGFBR3LH3BV60 316 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 OR10H2O60403 315 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 PDE9AO76083 593 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 PGM3O95394 542 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 AGR2O95994 175 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 MT-ND1P03886 318 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 BCHEP06276 602 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 GALNSP34059 522 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 SERTAD2Q14140 314 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 ERV3-1Q14264 604 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 GNA13Q14344 377 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 SF3A2Q15428 464 aaKnown RBP13.2□□□□□ -0.3
SS18-201ENST00000269137 TRMT12Q53H54 448 aaKnown RBP13.2□□□□□ -0.3
SS18-201ENST00000269137 EXOSC6Q5RKV6 272 aaKnown RBP13.2□□□□□ -0.3
SS18-201ENST00000269137 PHF19Q5T6S3 580 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 CDC73Q6P1J9 531 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 ZCCHC12Q6PEW1 402 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 IZUMO2Q6UXV1 221 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 EME1Q96AY2 570 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 RBM18Q96H35 190 aaKnown RBP13.2□□□□□ -0.3
SS18-201ENST00000269137 HSH2DQ96JZ2 352 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 OR7D2Q96RA2 312 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 PELOQ9BRX2 385 aaKnown RBP13.2□□□□□ -0.3
SS18-201ENST00000269137 ANKRA2Q9H9E1 313 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 CXorf21Q9HAI6 301 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 BCL2L10Q9HD36 194 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 DNAJB9Q9UBS3 223 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 LIPT1Q9Y234 373 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 DTNAQ9Y4J8 743 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 FER1L5A0AVI2 2057 aa13.2□□□□□ -0.3
SS18-201ENST00000269137 FAM149AA5PLN7 773 aa13.19□□□□□ -0.3
SS18-201ENST00000269137 HYAL3O43820 417 aaPredicted RBP13.19□□□□□ -0.3
SS18-201ENST00000269137 SLC28A2O43868 658 aa13.19□□□□□ -0.3
SS18-201ENST00000269137 NR2F1P10589 423 aa13.19□□□□□ -0.3
SS18-201ENST00000269137 FBLP22087 321 aaKnown RBP13.19□□□□□ -0.3
SS18-201ENST00000269137 STT3AP46977 705 aa13.19□□□□□ -0.3
SS18-201ENST00000269137 BTG2P78543 158 aa13.19□□□□□ -0.3
SS18-201ENST00000269137 PIWIL3Q7Z3Z3 882 aaKnown RBP13.19□□□□□ -0.3
SS18-201ENST00000269137 VTCN1Q7Z7D3 282 aa13.19□□□□□ -0.3
SS18-201ENST00000269137 OR10Q1Q8NGQ4 319 aa13.19□□□□□ -0.3
SS18-201ENST00000269137 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.19□□□□□ -0.3
SS18-201ENST00000269137 LZICQ8WZA0 190 aa13.19□□□□□ -0.3
SS18-201ENST00000269137 TREX2Q9BQ50 279 aaPredicted RBP13.19□□□□□ -0.3
SS18-201ENST00000269137 YIPF4Q9BSR8 244 aa13.19□□□□□ -0.3
SS18-201ENST00000269137 EQTNQ9NQ60 294 aa13.19□□□□□ -0.3
SS18-201ENST00000269137 ZNF639Q9UID6 485 aa13.19□□□□□ -0.3
SS18-201ENST00000269137 MYOCOSA0A1B0GUC4 107 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 H0YJX3 145 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 CDC123O75794 336 aaPredicted RBP13.18□□□□□ -0.3
SS18-201ENST00000269137 CT62P0C5K7 136 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 ZNF26P17031 533 aaPredicted RBP13.18□□□□□ -0.3
SS18-201ENST00000269137 ATP6V1C1P21283 382 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 CSTF2P33240 577 aaKnown RBP eCLIP13.18□□□□□ -0.3
SS18-201ENST00000269137 CRISP3P54108 245 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 KCNJ10P78508 379 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 IL11RAQ14626 422 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 SYPL1Q16563 259 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 SFT2D3Q587I9 215 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 QSOX2Q6ZRP7 698 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 GALNT12Q8IXK2 581 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 VWA5B2Q8N398 1253 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 ADAMTS15Q8TE58 950 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 ATOH1Q92858 354 aaPredicted RBP13.18□□□□□ -0.3
SS18-201ENST00000269137 RIT1Q92963 219 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 ZNF578Q96N58 590 aaPredicted RBP13.18□□□□□ -0.3
SS18-201ENST00000269137 VCXQ9H320 206 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 NTN4Q9HB63 628 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 MKKSQ9NPJ1 570 aaPredicted RBP13.18□□□□□ -0.3
SS18-201ENST00000269137 C8orf4Q9NR00 106 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 GIN1Q9NXP7 522 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 CCDC88CQ9P219 2028 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 JRKO75564 520 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 SOX30O94993 753 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 ONECUT2O95948 504 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 HBQ1P09105 142 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 FGF5P12034 268 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 ETS2P15036 469 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 ACADSP16219 412 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 S1PR1P21453 382 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 FUT5Q11128 374 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 ATAD3BQ5T9A4 648 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 ARHGAP40Q5TG30 622 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 HEPHL1Q6MZM0 1159 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 PPP4R4Q6NUP7 873 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 DGAT2L6Q6ZPD8 337 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 B3GNT8Q7Z7M8 397 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 ARMC8Q8IUR7 673 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 ZDHHC21Q8IVQ6 265 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 SLC44A2Q8IWA5 706 aaPredicted RBP13.18□□□□□ -0.3
SS18-201ENST00000269137 PACRGLQ8N7B6 248 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 CDRT4Q8N9R6 151 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 ICA1LQ8NDH6 482 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 AGBL5Q8NDL9 886 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 SIMC1Q8NDZ2 872 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 BBS10Q8TAM1 723 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 HOXB13Q92826 284 aaPredicted RBP13.18□□□□□ -0.3
SS18-201ENST00000269137 SLC35A4Q96G79 324 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms