RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 OR10A5Q9H207 317 aa25.35■■□□□ 1.65
CHMP4B-201ENST00000217402 C3orf14Q9HBI5 128 aa25.35■■□□□ 1.65
CHMP4B-201ENST00000217402 CPNE5Q9HCH3 593 aa25.35■■□□□ 1.65
CHMP4B-201ENST00000217402 EQTNQ9NQ60 294 aa25.35■■□□□ 1.65
CHMP4B-201ENST00000217402 ZKSCAN7Q9P0L1 754 aaPredicted RBP25.35■■□□□ 1.65
CHMP4B-201ENST00000217402 MAP10Q9P2G4 905 aa25.35■■□□□ 1.65
CHMP4B-201ENST00000217402 TAGLN3Q9UI15 199 aa25.35■■□□□ 1.65
CHMP4B-201ENST00000217402 PPIEQ9UNP9 301 aaKnown RBP25.35■■□□□ 1.65
CHMP4B-201ENST00000217402 C19orf53Q9UNZ5 99 aaPredicted RBP25.35■■□□□ 1.65
CHMP4B-201ENST00000217402 POLHQ9Y253 713 aa25.35■■□□□ 1.65
CHMP4B-201ENST00000217402 TRBV11-1A0A0K0K1C0 115 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 TMEM8BA6NDV4 472 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 AIM2O14862 343 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 EMC8O43402 210 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 SLC37A1P57057 533 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 PRR5P85299 388 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 TMEM64Q6YI46 380 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 DPP10Q8N608 796 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 TRIML2Q8N7C3 387 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 NUP43Q8NFH3 380 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 SLC35A5Q9BS91 424 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 ZNF223Q9UK11 482 aaPredicted RBP25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 PCDHB14Q9Y5E9 798 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 CCT8L1PA6NM43 557 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 PRAMEF2O60811 474 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 C1QCP02747 245 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 UQCRC2P22695 453 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 PTPN6P29350 595 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 Q0VFX4 171 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 CHAF1BQ13112 559 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 COQ5Q5HYK3 327 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 ZNF615Q8N8J6 731 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 OR7G1Q8NGA0 311 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 AURKBQ96GD4 344 aaPredicted RBP25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 FER1L6-AS2Q96M78 137 aa25.34■■□□□ 1.65
CHMP4B-201ENST00000217402 ERN1O75460 977 aaKnown RBP25.33■■□□□ 1.65
CHMP4B-201ENST00000217402 CHI3L1P36222 383 aaPredicted RBP25.33■■□□□ 1.65
CHMP4B-201ENST00000217402 DEFB109BQ30KR1 87 aa25.33■■□□□ 1.65
CHMP4B-201ENST00000217402 LRIF1Q5T3J3 769 aa25.33■■□□□ 1.65
CHMP4B-201ENST00000217402 PCYOX1LQ8NBM8 494 aa25.33■■□□□ 1.65
CHMP4B-201ENST00000217402 M1APQ8TC57 530 aa25.33■■□□□ 1.65
CHMP4B-201ENST00000217402 SFXN5Q8TD22 340 aa25.33■■□□□ 1.65
CHMP4B-201ENST00000217402 SEMA4CQ9C0C4 833 aa25.33■■□□□ 1.65
CHMP4B-201ENST00000217402 SLC25A37Q9NYZ2 338 aa25.33■■□□□ 1.65
CHMP4B-201ENST00000217402 A0A087WV48 116 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 COQ9O75208 318 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 UBOX5O94941 541 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 NUDT2P50583 147 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 CLCN2P51788 898 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 CAPRIN1Q14444 709 aaKnown RBP25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 ANGPTL8Q6UXH0 198 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 DLEU7Q6UYE1 221 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 MSRB3Q8IXL7 192 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 C9orf40Q8IXQ3 194 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 CLEC1AQ8NC01 280 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 OR56A1Q8NGH5 318 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 C16orf52Q8NHV5 167 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 MOAP1Q96BY2 351 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 MS4A4EQ96PG1 132 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 GAL3ST4Q96RP7 486 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 SLC39A3Q9BRY0 314 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 MMP25Q9NPA2 562 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 VAPAQ9P0L0 249 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 NIPSNAP3AQ9UFN0 247 aaPredicted RBP25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 DTX4Q9Y2E6 619 aa25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 NUP214P35658 2090 aaPredicted RBP25.32■■□□□ 1.64
CHMP4B-201ENST00000217402 BCAS2O75934 225 aaPredicted RBP25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 IFI6P09912 130 aa25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 ZCCHC18P0CG32 403 aa25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 ESRRAP11474 423 aaPredicted RBP25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 ICAM2P13598 275 aa25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 HOXB9P17482 250 aaPredicted RBP25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 EMDP50402 254 aa25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 ZNF155Q12901 538 aaPredicted RBP25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 TRMT5Q32P41 509 aaKnown RBP25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 HSDL2Q6YN16 418 aa25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 FBXO30Q8TB52 745 aa25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 PNPT1Q8TCS8 783 aaKnown RBP25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 ELP5Q8TE02 316 aa25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 EFCAB1Q9HAE3 211 aa25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 ATP13A2Q9NQ11 1180 aa25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 SDAD1Q9NVU7 687 aaKnown RBP eCLIP25.31■■□□□ 1.642e-7■■■■■ 45
CHMP4B-201ENST00000217402 NTMQ9P121 344 aa25.31■■□□□ 1.64
CHMP4B-201ENST00000217402 PRKNO60260 465 aaPredicted RBP25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 PSMG1O95456 288 aa25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 ITGAMP11215 1152 aa25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 RRADP55042 308 aa25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 CASP9P55211 416 aa25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 TMPRSS3P57727 454 aa25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 WDR53Q7Z5U6 358 aaPredicted RBP25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 KBTBD2Q8IY47 623 aa25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 TMEM102Q8N9M5 508 aaPredicted RBP25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 THAP3Q8WTV1 239 aaPredicted RBP25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 NSL1Q96IY1 281 aa25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 PHF12Q96QT6 1004 aa25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 HEMK1Q9Y5R4 338 aaPredicted RBP25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 CFAP47Q6ZTR5 3102 aa25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 GIMAP1-GIMAP5A0A087WTJ2 511 aa25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 HMGN2P05204 90 aaKnown RBP25.3■■□□□ 1.64
CHMP4B-201ENST00000217402 SERPINA7P05543 415 aa25.3■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms