RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 NCMAPQ5T1S8 102 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 LDLRAD1Q5T700 205 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 ENPP6Q6UWR7 440 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 TAS1R3Q7RTX0 852 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 DCXRQ7Z4W1 244 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 WDR53Q7Z5U6 358 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-216ENST00000637968 LDLRAD3Q86YD5 345 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 NPAS3Q8IXF0 933 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 GPR26Q8NDV2 337 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 DNAAF1Q8NEP3 725 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 CNOT9Q92600 299 aaKnown RBP5.48□□□□□ -1.53
SCN1A-216ENST00000637968 PYURFQ96I23 114 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 ZFP3Q96NJ6 502 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 SOX7Q9BT81 388 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 NTMT1Q9BV86 223 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 GAL3ST2Q9H3Q3 398 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 PNO1Q9NRX1 252 aaKnown RBP5.48□□□□□ -1.53
SCN1A-216ENST00000637968 ACSS1Q9NUB1 689 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-216ENST00000637968 IL17BQ9UHF5 180 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 PCDHA9Q9Y5H5 950 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 ABHD14A-ACY1A0A1B0GW23 586 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 K7ERQ8 282 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SMAD6O43541 496 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SELENOFO60613 162 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 GIPP09681 153 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 ACVR2AP27037 513 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 GIFP27352 417 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 GALNSP34059 522 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 RPS10P46783 165 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 AVPR1BP47901 424 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 MECP2P51608 486 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 CTSCP53634 463 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 HLXQ14774 488 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 BATFQ16520 125 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 OVOS1Q6IE37 1185 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 QSOX2Q6ZRP7 698 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SV2AQ7L0J3 742 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 OTOP2Q7RTS6 562 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 LRRTM4Q86VH4 590 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 VRK3Q8IV63 474 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 DTWD1Q8N5C7 304 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 OR56B2PQ8NGI1 322 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SPPL2AQ8TCT8 520 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 FAM151AQ8WW52 585 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 EXTL1Q92935 676 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SLC41A3Q96GZ6 507 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 HBEGFQ99075 208 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 NEU1Q99519 415 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 POLDIP3Q9BY77 421 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 REG4Q9BYZ8 158 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 IL17RBQ9NRM6 502 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 PTGFRNQ9P2B2 879 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 GAB2Q9UQC2 676 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 A0A0B4J293 547 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 LOC285095A0A1B0GVY8 99 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 LNP1A1A4G5 178 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SGK494L7N484 410 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 PIP5K1BO14986 540 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 TCF21O43680 179 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 AOC2O75106 756 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 AQP8O94778 261 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 LGI1O95970 557 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 RLN1P04808 185 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 RPLP1P05386 114 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 C1GALT1C1LP0DN25 315 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 HOXD8P13378 290 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 ACPPP15309 386 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 CNR1P21554 472 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 TBXA2RP21731 343 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 GPX3P22352 226 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 VIPR1P32241 457 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 DNAJB13P59910 316 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 RBM39Q14498 530 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 LIPKQ5VXJ0 399 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 CDC73Q6P1J9 531 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 ZNF529Q6P280 563 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 B3GLCTQ6Y288 498 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 RELL2Q8NC24 303 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 CPEB3Q8NE35 698 aaKnown RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 DCAF4Q8WV16 495 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 DNASE1L2Q92874 299 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 FOXRED1Q96CU9 486 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SPATA13Q96N96 652 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 ZNF599Q96NL3 588 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 CGRRF1Q99675 332 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 ADAM2Q99965 735 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 TRIM2Q9C040 744 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 GBA2Q9HCG7 927 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 MYOZ2Q9NPC6 264 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 DMAC2Q9NW81 257 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 RPS6KB2Q9UBS0 482 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SLC27A6Q9Y2P4 619 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 MMACHCQ9Y4U1 282 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SUPT3HB4E1H0 165 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 PRRT4C9JH25 899 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 F5H0A9 414 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-216ENST00000637968 SLC16A4O15374 487 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 PIP5K1CO60331 668 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 TLR5O60602 858 aa5.47□□□□□ -1.53
SCN1A-216ENST00000637968 EEDO75530 441 aaKnown RBP5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 136.4 ms