RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 OTOAQ7RTW8 1153 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 TAC4Q86UU9 113 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 RFX6Q8HWS3 928 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 FAM185AQ8N0U4 392 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 RPRMLQ8N4K4 120 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 DQX1Q8TE96 717 aaKnown RBP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 PIGTQ969N2 578 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 TRIM44Q96DX7 344 aaPredicted RBP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 VPS39Q96JC1 886 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 SLC41A2Q96JW4 573 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 BTN2A3PQ96KV6 586 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 DGAT2Q96PD7 388 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 OR2M4Q96R27 311 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 TUBB2BQ9BVA1 445 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 FRMD8Q9BZ67 464 aaPredicted RBP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 SLC7A5P2Q9GIP4 190 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 ACTR5Q9H9F9 607 aaPredicted RBP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 SCPEP1Q9HB40 452 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 PHPT1Q9NRX4 125 aaPredicted RBP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 THAP1Q9NVV9 213 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 FBXL17Q9UF56 701 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 LEF1Q9UJU2 399 aaPredicted RBP4.02□□□□□ -1.77
LINC00540-201ENST00000611481 VANGL2Q9ULK5 521 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 NENFQ9UMX5 172 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 SLC12A4Q9UP95 1085 aa4.02□□□□□ -1.77
LINC00540-201ENST00000611481 RNF103-CHMP3A0A140T963 221 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 A0A1W2PPR1 153 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 SPRY2O43597 315 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 CLDN11O75508 207 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 LCA5LO95447 670 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 ASS1P00966 412 aaKnown RBP4.01□□□□□ -1.77
LINC00540-201ENST00000611481 JCHAINP01591 159 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 STATHP02808 62 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 TUBBP07437 444 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 HEXBP07686 556 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 KRT13P13646 458 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 TCEA1P23193 301 aaKnown RBP4.01□□□□□ -1.77
LINC00540-201ENST00000611481 KRTAP5-9P26371 169 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 CAPZBP47756 277 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 CASP4P49662 377 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 NPY4RP50391 375 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 BMXP51813 675 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 MVDP53602 400 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 PGGT1BP53609 377 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 NUP107P57740 925 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 SLC26A5P58743 744 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 ARF5P84085 180 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 CYP24A1Q07973 514 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 INCA1Q0VD86 236 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 PMPCAQ10713 525 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 FRG1Q14331 258 aaKnown RBP4.01□□□□□ -1.77
LINC00540-201ENST00000611481 MFSD13AQ14CX5 517 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 SNRNP35Q16560 246 aaKnown RBP4.01□□□□□ -1.77
LINC00540-201ENST00000611481 HYAL4Q2M3T9 481 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 KBTBD12Q3ZCT8 623 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 FAM90A2PQ658T7 463 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 RBPMS2Q6ZRY4 209 aaKnown RBP4.01□□□□□ -1.77
LINC00540-201ENST00000611481 TMEM26Q6ZUK4 368 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 MARK2Q7KZI7 788 aaKnown RBP4.01□□□□□ -1.77
LINC00540-201ENST00000611481 GSTA5Q7RTV2 222 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 SLC46A3Q7Z3Q1 461 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 ADCK2Q7Z695 626 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 CHERPQ8IWX8 916 aaKnown RBP4.01□□□□□ -1.77
LINC00540-201ENST00000611481 PEX5LQ8IYB4 626 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 GHDCQ8N2G8 530 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 FBXL16Q8N461 479 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 LRRC17Q8N6Y2 441 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 PLD5Q8N7P1 536 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 ATP6V0D2Q8N8Y2 350 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 WIPF2Q8TF74 440 aaPredicted RBP4.01□□□□□ -1.77
LINC00540-201ENST00000611481 RAB40AQ8WXH6 277 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 CNOT9Q92600 299 aaKnown RBP4.01□□□□□ -1.77
LINC00540-201ENST00000611481 HAS2Q92819 552 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 PTERQ96BW5 349 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 ZNF501Q96CX3 271 aaPredicted RBP4.01□□□□□ -1.77
LINC00540-201ENST00000611481 C1orf74Q96LT6 269 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 CCL19Q99731 98 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 FERMT1Q9BQL6 677 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 CTDSP1Q9GZU7 261 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 CNGB3Q9NQW8 809 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 ANO10Q9NW15 660 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 TMEM45AQ9NWC5 275 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 TAS2R3Q9NYW6 316 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 IL1RAPL1Q9NZN1 696 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 CWC15Q9P013 229 aaKnown RBP4.01□□□□□ -1.77
LINC00540-201ENST00000611481 ACTR3BQ9P1U1 418 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 IL19Q9UHD0 177 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 STEAP1Q9UHE8 339 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 AP1M2Q9Y6Q5 423 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 RYR2Q92736 4967 aa4.01□□□□□ -1.77
LINC00540-201ENST00000611481 A0A1W2PRV1 198 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 LRRC53A6NM62 1247 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 OR6C76A6NM76 312 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 IFITM10A6NMD0 228 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 XPO1O14980 1071 aaKnown RBP4□□□□□ -1.77
LINC00540-201ENST00000611481 LDLRAD4O15165 306 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 ADAMDEC1O15204 470 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 IPO7O95373 1038 aaKnown RBP4□□□□□ -1.77
LINC00540-201ENST00000611481 POP4O95707 220 aaKnown RBP4□□□□□ -1.77
LINC00540-201ENST00000611481 WDPCPO95876 746 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms