RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 XKP51811 444 aa9□□□□□ -0.97
VRK3-216ENST00000599342 FBXW4P57775 412 aa9□□□□□ -0.97
VRK3-216ENST00000599342 FUT7Q11130 342 aa9□□□□□ -0.97
VRK3-216ENST00000599342 TOMM20Q15388 145 aa9□□□□□ -0.97
VRK3-216ENST00000599342 SLC25A35Q3KQZ1 300 aa9□□□□□ -0.97
VRK3-216ENST00000599342 TEX35Q5T0J7 233 aa9□□□□□ -0.97
VRK3-216ENST00000599342 LGSNQ5TDP6 509 aa9□□□□□ -0.97
VRK3-216ENST00000599342 CES4AQ5XG92 561 aa9□□□□□ -0.97
VRK3-216ENST00000599342 RTL6Q6ICC9 239 aa9□□□□□ -0.97
VRK3-216ENST00000599342 WDR53Q7Z5U6 358 aaPredicted RBP9□□□□□ -0.97
VRK3-216ENST00000599342 PACS2Q86VP3 889 aa9□□□□□ -0.97
VRK3-216ENST00000599342 VWA5B2Q8N398 1253 aa9□□□□□ -0.97
VRK3-216ENST00000599342 METTL4Q8N3J2 472 aa9□□□□□ -0.97
VRK3-216ENST00000599342 MMGT1Q8N4V1 131 aa9□□□□□ -0.97
VRK3-216ENST00000599342 ZNF441Q8N8Z8 693 aa9□□□□□ -0.97
VRK3-216ENST00000599342 C17orf47Q8NEP4 570 aa9□□□□□ -0.97
VRK3-216ENST00000599342 OR7G1Q8NGA0 311 aa9□□□□□ -0.97
VRK3-216ENST00000599342 SPPL2AQ8TCT8 520 aa9□□□□□ -0.97
VRK3-216ENST00000599342 SECISBP2Q96T21 854 aaKnown RBP9□□□□□ -0.97
VRK3-216ENST00000599342 BRINP2Q9C0B6 783 aa9□□□□□ -0.97
VRK3-216ENST00000599342 BRF2Q9HAW0 419 aa9□□□□□ -0.97
VRK3-216ENST00000599342 PROK2Q9HC23 129 aa9□□□□□ -0.97
VRK3-216ENST00000599342 ZBTB26Q9HCK0 441 aa9□□□□□ -0.97
VRK3-216ENST00000599342 NMRK1Q9NWW6 199 aa9□□□□□ -0.97
VRK3-216ENST00000599342 Q9UFV3 132 aa9□□□□□ -0.97
VRK3-216ENST00000599342 KCNN3Q9UGI6 736 aa9□□□□□ -0.97
VRK3-216ENST00000599342 NPFFR2Q9Y5X5 522 aa9□□□□□ -0.97
VRK3-216ENST00000599342 FBN2P35556 2912 aa9□□□□□ -0.97
VRK3-216ENST00000599342 PCNX1Q96RV3 2341 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 EXOC1LA0A1B0GW35 172 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 HSPB2A8KAH6 182 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 A8MT66 165 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 CDH16O75309 829 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 ERAL1O75616 437 aaKnown RBP8.99□□□□□ -0.97
VRK3-216ENST00000599342 TRAPPC6AO75865 159 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 ZWINTO95229 277 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 PDYNP01213 254 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 SNRPAP09012 282 aaKnown RBP8.99□□□□□ -0.97
VRK3-216ENST00000599342 CTAGE8P0CG41 777 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 TAC1P20366 129 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 ALDH9A1P49189 494 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 CDH13P55290 713 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 DUSP8Q13202 625 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 HSPB2Q16082 182 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 GLE1Q53GS7 698 aaKnown RBP8.99□□□□□ -0.97
VRK3-216ENST00000599342 RIPPLY2Q5TAB7 128 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 SLC48A1Q6P1K1 146 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 LETMD1Q6P1Q0 360 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 TMEM64Q6YI46 380 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 RPS27LQ71UM5 84 aaKnown RBP8.99□□□□□ -0.97
VRK3-216ENST00000599342 COMMD6Q7Z4G1 85 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 CTAGE4Q8IX94 777 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 PM20D2Q8IYS1 436 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 ULK2Q8IYT8 1036 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 ZNF615Q8N8J6 731 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 NOA1Q8NC60 698 aaKnown RBP8.99□□□□□ -0.97
VRK3-216ENST00000599342 UHMK1Q8TAS1 419 aaKnown RBP8.99□□□□□ -0.97
VRK3-216ENST00000599342 TRPC4APQ8TEL6 797 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 ZNF483Q8TF39 744 aaPredicted RBP8.99□□□□□ -0.97
VRK3-216ENST00000599342 DCAKDQ8WVC6 231 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 ADIPOR1Q96A54 375 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 KLHL29Q96CT2 875 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 LRRC46Q96FV0 321 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 RILPQ96NA2 401 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 FAIM2Q9BWQ8 316 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 PFDN4Q9NQP4 134 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 FARSBQ9NSD9 589 aaKnown RBP8.99□□□□□ -0.97
VRK3-216ENST00000599342 TRPS1Q9UHF7 1281 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 BCAP29Q9UHQ4 241 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 DMGDHQ9UI17 866 aaKnown RBP8.99□□□□□ -0.97
VRK3-216ENST00000599342 PSME2Q9UL46 239 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 PCDHA9Q9Y5H5 950 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 PKDREJQ9NTG1 2253 aa8.99□□□□□ -0.97
VRK3-216ENST00000599342 PHF3Q92576 2039 aaKnown RBP8.98□□□□□ -0.97
VRK3-216ENST00000599342 AHRRA9YTQ3 701 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 DVL2O14641 736 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 TRIM3O75382 744 aaPredicted RBP8.98□□□□□ -0.97
VRK3-216ENST00000599342 SUPT7LO94864 414 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 OR4F21O95013 312 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 ESRRBO95718 433 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 KRT6AP02538 564 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 KRT6BP04259 564 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 ATP1B1P05026 303 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 TSPAN8P19075 237 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 CSNK2A2P19784 350 aaPredicted RBP8.98□□□□□ -0.97
VRK3-216ENST00000599342 GPX3P22352 226 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 ABCD3P28288 659 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 GCKP35557 465 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 FEN1P39748 380 aaKnown RBP8.98□□□□□ -0.97
VRK3-216ENST00000599342 ADH7P40394 386 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 PEX19P40855 299 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 KRT6CP48668 564 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 CLCQ05315 142 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 PLCXD2Q0VAA5 305 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 GALNT1Q10472 559 aaPredicted RBP8.98□□□□□ -0.97
VRK3-216ENST00000599342 RASA2Q15283 850 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 SF3B4Q15427 424 aaKnown RBP eCLIP8.98□□□□□ -0.97
VRK3-216ENST00000599342 NNATQ16517 81 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 PRICKLE4Q2TBC4 344 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 BICRALQ6AI39 1079 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms