RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 CNIH4Q9P003 139 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 RNF112Q9ULX5 631 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 MRPS33Q9Y291 106 aaKnown RBP12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 B3GALT2O43825 422 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 TP53P04637 393 aaPredicted RBP12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 GNAZP19086 355 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 CERS1P27544 350 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 HSPA7P48741 367 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 CDK9P50750 372 aaKnown RBP12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 NAGLUP54802 743 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 LIM2P55344 173 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 ATP5J2P56134 94 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 IRF9Q00978 393 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 SRSF2Q01130 221 aaKnown RBP12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 TOMM20Q15388 145 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 UAP1Q16222 522 aaPredicted RBP12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 MROH9Q5TGP6 573 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 SULT1C3Q6IMI6 304 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 DGAT2L6Q6ZPD8 337 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 CENPLQ8N0S6 344 aaPredicted RBP12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 MEIOBQ8N635 442 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 SLC22A8Q8TCC7 542 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 CCT6BQ92526 530 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 EXT2Q93063 718 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 ABTB1Q969K4 478 aaPredicted RBP12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 GAL3ST3Q96A11 431 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 ANKRD9Q96BM1 317 aaPredicted RBP12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 PPWD1Q96BP3 646 aaKnown RBP12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 ZC3HAV1LQ96H79 300 aaKnown RBP12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 SENP5Q96HI0 755 aaPredicted RBP12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 ATOH8Q96SQ7 321 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 AIF1LQ9BQI0 150 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 SFXN3Q9BWM7 321 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 ALG9Q9H6U8 611 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 SNX15Q9NRS6 342 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 CD274Q9NZQ7 290 aa12.52□□□□□ -0.41
SHKBP1-208ENST00000595726 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 HEATR5AQ86XA9 2040 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 LRIT2A6NDA9 550 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 KERAO60938 352 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 RCBTB2O95199 551 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 ALDOAP04075 364 aaKnown RBP12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 HPNP05981 417 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 LTA4HP09960 611 aaKnown RBP12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 FBXO45P0C2W1 286 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 C1GALT1C1LP0DN25 315 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 CRYGSP22914 178 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 LOXP28300 417 aaPredicted RBP12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 KCNC1P48547 511 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 STXBP1P61764 594 aaKnown RBP12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 SRYQ05066 204 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 VEZF1Q14119 521 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 RCAN2Q14206 197 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 CHRFAM7AQ494W8 412 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 FNDC7Q5VTL7 733 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 SLCO4C1Q6ZQN7 724 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 C22orf34Q6ZV56 151 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 ZNF550Q7Z398 422 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 ISCA2Q86U28 154 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 YRDCQ86U90 279 aaKnown RBP12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 OR4N5Q8IXE1 308 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 STAG3L4Q8TBR4 150 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 ZPLD1Q8TCW7 415 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 KCTD4Q8WVF5 259 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 DIO2Q92813 273 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 ESAMQ96AP7 390 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 MARK4Q96L34 752 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 ZNF597Q96LX8 424 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 MED18Q9BUE0 208 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 REG4Q9BYZ8 158 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 UBQLN3Q9H347 655 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 CNOT10Q9H9A5 744 aaKnown RBP12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 NMRAL1Q9HBL8 299 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 ZNF701Q9NV72 531 aaPredicted RBP12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 DNAJC11Q9NVH1 559 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 ZNF226Q9NYT6 803 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 GPRC5BQ9NZH0 403 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 NUDT4Q9NZJ9 180 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 COPS7AQ9UBW8 275 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 PTBP2Q9UKA9 531 aaKnown RBP12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 DAPP1Q9UN19 280 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 ACOT9Q9Y305 439 aa12.51□□□□□ -0.41
SHKBP1-208ENST00000595726 UBXN8O00124 270 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 PRAMEF4O60810 478 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 STK16O75716 305 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 TBX6O95947 436 aaPredicted RBP12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 S100BP04271 92 aaPredicted RBP12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 C2P06681 752 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 CYP4B1P13584 511 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 MSH2P43246 934 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 SERPINB8P50452 374 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 SLBPQ14493 270 aaKnown RBP eCLIP12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 PDK4Q16654 411 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 CLEC12BQ2HXU8 276 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 NHSL2Q5HYW2 709 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 PRAMEF9Q5VWM5 478 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 CCDC91Q7Z6B0 441 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 NUBPLQ8TB37 319 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 TMEM171Q8WVE6 324 aa12.5□□□□□ -0.41
SHKBP1-208ENST00000595726 NXNL1Q96CM4 212 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms