RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 CNPPD1Q9BV87 410 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 ANGPTL4Q9BY76 406 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 UBQLN3Q9H347 655 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 ELOVL6Q9H5J4 265 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 PNPLA3Q9NST1 481 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 ZNF639Q9UID6 485 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 PCDHA9Q9Y5H5 950 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 FAM215AQ9Y5M1 114 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 NPFFR2Q9Y5X5 522 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 ABCA4P78363 2273 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 AKAP6Q13023 2319 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 MYOCOSA0A1B0GUC4 107 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 SERTM1A2A2V5 107 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 AHRRA9YTQ3 701 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 H3BQF6 201 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 PGRMC2O15173 223 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 ACOX3O15254 700 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 RHOXF2BP0C7M4 288 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 GLI4P10075 376 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 S1PR1P21453 382 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 ZFP36L2P47974 494 aaKnown RBP13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 XKP51811 444 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 NEK2P51955 445 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 MAPK12P53778 367 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 NUP107P57740 925 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 DCAF7P61962 342 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 C6orf163Q5TEZ5 329 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 TTC19Q6DKK2 380 aaPredicted RBP13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 RTL6Q6ICC9 239 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 SPNS3Q6ZMD2 512 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 HOMEZQ8IX15 550 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 GBP7Q8N8V2 638 aaPredicted RBP13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 EIF1ADQ8N9N8 165 aaKnown RBP13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 OR4F6Q8NGB9 312 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 OR10G3Q8NGC4 313 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 SPPL2AQ8TCT8 520 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 HSPBAP1Q96EW2 488 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 ZNF597Q96LX8 424 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 C16orf45Q96MC5 204 aaPredicted RBP13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 OR10A5Q9H207 317 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 PRM3Q9NNZ6 103 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 NPDC1Q9NQX5 325 aaPredicted RBP13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 ZNF358Q9NW07 568 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 SIRT5Q9NXA8 310 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 TEX10Q9NXF1 929 aaPredicted RBP13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 ACAD8Q9UKU7 415 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 NFU1Q9UMS0 254 aa13.32□□□□□ -0.28
SMARCE1-216ENST00000580419 A8MT66 165 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 TRIM49D1C9J1S8 452 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 BCAS2O75934 225 aaPredicted RBP13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 KRT6AP02538 564 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 KRT6BP04259 564 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 HPNP05981 417 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 KLK1P06870 262 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 GSTA1P08263 222 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 SBK3P0C264 359 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 CSNK2A2P19784 350 aaPredicted RBP13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 TAC1P20366 129 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 ENDOUP21128 410 aaKnown RBP13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 TIMP3P35625 211 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 PIGAP37287 484 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 KRT6CP48668 564 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 GALNT1Q10472 559 aaPredicted RBP13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 CSTF3Q12996 717 aaKnown RBP13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 RASA2Q15283 850 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 PRICKLE4Q2TBC4 344 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 FBXL19-AS1Q494R0 122 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 CCNYL2Q5T2Q4 361 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 C1orf185Q5T7R7 199 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 HLA-DQA1Q5Y7H0 255 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 TMEM198Q66K66 360 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 GALNT18Q6P9A2 607 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 NCCRP1Q6ZVX7 275 aaPredicted RBP13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 COMMD6Q7Z4G1 85 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 SLC22A9Q8IVM8 553 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 PM20D2Q8IYS1 436 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 VWA5B2Q8N398 1253 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 NOA1Q8NC60 698 aaKnown RBP13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 ZNF675Q8TD23 568 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 MRRFQ96E11 262 aaKnown RBP13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 DTNBP1Q96EV8 351 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 TMEM41AQ96HV5 264 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 CDK15Q96Q40 435 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 ZNF382Q96SR6 550 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 DOHHQ9BU89 302 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 FAIM2Q9BWQ8 316 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 MRPL1Q9BYD6 325 aaKnown RBP13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 LDAHQ9H6V9 325 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 SEMA4BQ9NPR2 832 aaPredicted RBP13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 TNFRSF10DQ9UBN6 386 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 VPS29Q9UBQ0 182 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 LIPGQ9Y5X9 500 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 MPDZO75970 2070 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 DOCK7Q96N67 2140 aa13.31□□□□□ -0.28
SMARCE1-216ENST00000580419 MAP1AP78559 2803 aaPredicted RBP13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 ATP6AP2A0A1C7CYW4 349 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 CCDC151A5D8V7 595 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 GLOD5A6NK44 160 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 HSPB2A8KAH6 182 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 TO15178 435 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms