RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SNRPGP62308 76 aaKnown RBP9.52□□□□□ -0.89
VPS53-220ENST00000576149 IFITM3Q01628 133 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 GPR19Q15760 415 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 RPE65Q16518 533 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 C9orf50Q5SZB4 431 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 SLX4IPQ5VYV7 408 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 KIAA1211LQ6NV74 962 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 PGBD2Q6P3X8 592 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 PARM1Q6UWI2 310 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 KRT73Q86Y46 540 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 FBXL6Q8N531 539 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 ARL6IP6Q8N6S5 226 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 OR2L5Q8NG80 312 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 OR8K5Q8NH50 307 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 SUN3Q8TAQ9 357 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 GANCQ8TET4 914 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 ELSPBP1Q96BH3 223 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 MYADMQ96S97 322 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 APOOQ9BUR5 198 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 MMP27Q9H306 513 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 SLC25A19Q9HC21 320 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 FZD3Q9NPG1 666 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 TAS2R16Q9NYV7 291 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 TRPC4Q9UBN4 977 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 IFT52Q9Y366 437 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 PCDHGA3Q9Y5H0 932 aa9.52□□□□□ -0.89
VPS53-220ENST00000576149 METTL15A6NJ78 407 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 ZW10O43264 779 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 GUCY1B2O75343 617 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 SLITRK5O94991 958 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 IGFBP1P08833 259 aaPredicted RBP9.51□□□□□ -0.89
VPS53-220ENST00000576149 ZNF24P17028 368 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 TNFRSF4P43489 277 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 BCAP31P51572 246 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 CRISP3P54108 245 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 UGT2B15P54855 530 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 SEC13P55735 322 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 TRIM16LQ309B1 348 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 ZNF404Q494X3 552 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 C12orf73Q69YU5 71 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 PLAG1Q6DJT9 500 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 BBS10Q8TAM1 723 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 SFXN5Q8TD22 340 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 FGF14Q92915 247 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 CNRIP1Q96F85 164 aaPredicted RBP9.51□□□□□ -0.89
VPS53-220ENST00000576149 SCARF2Q96GP6 870 aaPredicted RBP9.51□□□□□ -0.89
VPS53-220ENST00000576149 IL4I1Q96RQ9 567 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 CDCA3Q99618 268 aaPredicted RBP9.51□□□□□ -0.89
VPS53-220ENST00000576149 RPP25Q9BUL9 199 aaKnown RBP9.51□□□□□ -0.89
VPS53-220ENST00000576149 ARMC7Q9H6L4 198 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 KCNK12Q9HB15 430 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 C11orf16Q9NQ32 467 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 SPHK1Q9NYA1 384 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 DAPK2Q9UIK4 370 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 KLK4Q9Y5K2 254 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 DOCK9Q9BZ29 2069 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 HEATR5BQ9P2D3 2071 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 M0R3H8 397 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 ENTPD6O75354 484 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 ERAL1O75616 437 aaKnown RBP9.51□□□□□ -0.89
VPS53-220ENST00000576149 UGT2B17O75795 530 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 SOX14O95416 240 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 AIFM1O95831 613 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 EPPINO95925 133 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 HMGN2P05204 90 aaKnown RBP9.51□□□□□ -0.89
VPS53-220ENST00000576149 GLULP15104 373 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 XKP51811 444 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 PRKAG1P54619 331 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 DUSP2Q05923 314 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 FUT5Q11128 374 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 PIN1Q13526 163 aaPredicted RBP9.51□□□□□ -0.89
VPS53-220ENST00000576149 LRRC32Q14392 662 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 TOR1AIP1Q5JTV8 583 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 TMEM201Q5SNT2 666 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 PERM1Q5SV97 790 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 BHLHB9Q6PI77 547 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 SYCE2Q6PIF2 218 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 C19orf48Q6RUI8 117 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 CCDC116Q8IYX3 515 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 TMEM145Q8NBT3 493 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 Q96MT0 163 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 OR5M11Q96RB7 305 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 SPATA5L1Q9BVQ7 753 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 C1QTNF7Q9BXJ2 289 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 NXF2Q9GZY0 626 aaKnown RBP9.51□□□□□ -0.89
VPS53-220ENST00000576149 LMAN2LQ9H0V9 348 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 POLR2J3Q9H1A7 115 aaKnown RBP9.51□□□□□ -0.89
VPS53-220ENST00000576149 OR51E2Q9H255 320 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 SYNPO2LQ9H987 977 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 SCHIP1Q9P0W5 487 aaPredicted RBP9.51□□□□□ -0.89
VPS53-220ENST00000576149 CES1P1Q9UKY3 287 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 A3GALT2U3KPV4 340 aa9.51□□□□□ -0.89
VPS53-220ENST00000576149 CCDC88CQ9P219 2028 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 A6NJY4 79 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 H3BN98 237 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 DSCR3O14972 297 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 LGI1O95970 557 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 TP53P04637 393 aaPredicted RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 CHRM4P08173 479 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 HSMCR30P0CW71 290 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms