RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 COX10Q12887 443 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 PAQR6Q6TCH4 344 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 PIK3R3Q92569 461 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 FGF11Q92914 225 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 C12orf66Q96MD2 445 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 GPA33Q99795 319 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 FNDC11Q9BVV2 318 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 C3orf14Q9HBI5 128 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 EXOSC4Q9NPD3 245 aaKnown RBP21.5■■□□□ 1.03
VPS53-211ENST00000571805 THAP10Q9P2Z0 257 aaPredicted RBP21.5■■□□□ 1.03
VPS53-211ENST00000571805 CRNNQ9UBG3 495 aaPredicted RBP21.5■■□□□ 1.03
VPS53-211ENST00000571805 LINC01553A4QN01 128 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 SNPHO15079 494 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 CHRM4P08173 479 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 PPP2R1BP30154 601 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 NCBP2P52298 156 aaKnown RBP eCLIP21.5■■□□□ 1.03
VPS53-211ENST00000571805 ZIC1Q15915 447 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 SLC25A30Q5SVS4 291 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 MORN4Q8NDC4 146 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 OR4K5Q8NGD3 323 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 OR6T1Q8NGN1 323 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 CAMK1GQ96NX5 476 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 NDUFB11Q9NX14 153 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 SEC14L4Q9UDX3 406 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 CHD9Q3L8U1 2897 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 GLOD5A6NK44 160 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 C4orf51C9J302 202 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 TLX2O43763 284 aaPredicted RBP21.49■■□□□ 1.03
VPS53-211ENST00000571805 LGI1O95970 557 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 TNFSF8P32971 234 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 PTGER1P34995 402 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 PCYT1AP49585 367 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 EFNB1P98172 346 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 AGBL4Q5VU57 503 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 TMC5Q6UXY8 1006 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 HMGN2P46Q86SG4 172 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 BBS10Q8TAM1 723 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 SMARCD2Q92925 531 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 ABHD8Q96I13 439 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 SLC30A2Q9BRI3 323 aa21.49■■□□□ 1.03
VPS53-211ENST00000571805 WWP2O00308 870 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 PCDH8O95206 1070 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 STATHP02808 62 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 ACP5P13686 325 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 BCL6P41182 706 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 GIPRP48546 466 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 DMPKQ09013 629 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 HYAL2Q12891 473 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 CARTPTQ16568 116 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 ACSM5Q6NUN0 579 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 C1orf94Q6P1W5 598 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 CCBE1Q6UXH8 406 aaPredicted RBP21.48■■□□□ 1.03
VPS53-211ENST00000571805 CACUL1Q86Y37 369 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 MACROD1Q9BQ69 325 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 POLR2J2Q9GZM3 115 aaKnown RBP21.48■■□□□ 1.03
VPS53-211ENST00000571805 SMURF1Q9HCE7 757 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 STUB1Q9UNE7 303 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 PDZK1P1A8MUH7 402 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 PSMA1P25786 263 aaKnown RBP21.48■■□□□ 1.03
VPS53-211ENST00000571805 MAN2A2P49641 1150 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 KHKP50053 298 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 RAB28P51157 221 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 CDK5Q00535 292 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 KRR1Q13601 381 aaKnown RBP21.48■■□□□ 1.03
VPS53-211ENST00000571805 GINS1Q14691 196 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 TMEM35AQ53FP2 167 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 SYT14P1Q58G82 188 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 ATAD3BQ5T9A4 648 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 TMEM64Q6YI46 380 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 FAM20CQ8IXL6 584 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 RAB42Q8N4Z0 105 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 FAIM2Q9BWQ8 316 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 TESQ9UGI8 421 aaKnown RBP21.48■■□□□ 1.03
VPS53-211ENST00000571805 TRAPPC4Q9Y296 219 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 SLC9A8Q9Y2E8 581 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 ASB4Q9Y574 426 aa21.48■■□□□ 1.03
VPS53-211ENST00000571805 PGRMC2O15173 223 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 MID1O15344 667 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 LATO43561 262 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 TRIM23P36406 574 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 PRKAG1P54619 331 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 MLLT11Q13015 90 aaPredicted RBP21.47■■□□□ 1.03
VPS53-211ENST00000571805 NDUFA9Q16795 377 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 TMEM240Q5SV17 173 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 IQCHQ86VS3 1027 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 TRIM69Q86WT6 500 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 LINC00471Q8N535 108 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 FLCNQ8NFG4 579 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 SUN3Q8TAQ9 357 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 BBS4Q96RK4 519 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 YIPF4Q9BSR8 244 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 CCDC32Q9BV29 185 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 ERVK13-1Q9NX77 482 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 FBXL12Q9NXK8 326 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 DIMT1Q9UNQ2 313 aaKnown RBP21.47■■□□□ 1.03
VPS53-211ENST00000571805 ZNF670-ZNF695F2Z2N8 137 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 TIE1P35590 1138 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 MAGEA10P43363 369 aaPredicted RBP21.47■■□□□ 1.03
VPS53-211ENST00000571805 DUSP2Q05923 314 aa21.47■■□□□ 1.03
VPS53-211ENST00000571805 SLAMF1Q13291 335 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms