RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PTGR1Q14914 329 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 RPS6KA2Q15349 733 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 SLC9B1Q4ZJI4 515 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 CRB2Q5IJ48 1285 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 VWA5B1Q5TIE3 1220 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 AGAP7PQ5VUJ5 663 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 ASB18Q6ZVZ8 466 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 MAVSQ7Z434 540 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 SLC5A8Q8N695 610 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 GLB1L3Q8NCI6 653 aaPredicted RBP19.17■□□□□ 0.66
VPS53-210ENST00000571456 OR7G1Q8NGA0 311 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 TM9SF4Q92544 642 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 EXOSC8Q96B26 276 aaKnown RBP19.17■□□□□ 0.66
VPS53-210ENST00000571456 ZBED6CLQ96FA7 236 aaPredicted RBP19.17■□□□□ 0.66
VPS53-210ENST00000571456 THOC3Q96J01 351 aaKnown RBP19.17■□□□□ 0.66
VPS53-210ENST00000571456 AGAP4Q96P64 663 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 SLC25A23Q9BV35 468 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 DPY30Q9C005 99 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 BRINP2Q9C0B6 783 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 CXorf21Q9HAI6 301 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 ACSS1Q9NUB1 689 aaPredicted RBP19.17■□□□□ 0.66
VPS53-210ENST00000571456 AIG1Q9NVV5 245 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 TMEM45AQ9NWC5 275 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 BAIAP2L1Q9UHR4 511 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 CFL2Q9Y281 166 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 GOLGA8QA0A0J9YX86 632 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 GOLGA8OA6NCC3 632 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 OR6C76A6NM76 312 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 GOLGA8NF8WBI6 632 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 UBDO15205 165 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 CLDN1O95832 211 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 MRPL19P49406 292 aaKnown RBP19.16■□□□□ 0.66
VPS53-210ENST00000571456 IDH3AP50213 366 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 SRSF11Q05519 484 aaKnown RBP19.16■□□□□ 0.66
VPS53-210ENST00000571456 MLC1Q15049 377 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 CPTPQ5TA50 214 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 H3F3CQ6NXT2 135 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 RIMKLAQ8IXN7 391 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 APCDD1LQ8NCL9 501 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 CPT1CQ8TCG5 803 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 SLC2A12Q8TD20 617 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 TESCQ96BS2 214 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 SMAD5Q99717 465 aaKnown RBP19.16■□□□□ 0.66
VPS53-210ENST00000571456 KCNK13Q9HB14 408 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 TRIM33Q9UPN9 1127 aa19.16■□□□□ 0.66
VPS53-210ENST00000571456 EXO1Q9UQ84 846 aaKnown RBP19.16■□□□□ 0.66
VPS53-210ENST00000571456 GABRR3A8MPY1 467 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 A8MUA0 341 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 PDPK1O15530 556 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 ZFAND5O76080 213 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 NT5EP21589 574 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 FEN1P39748 380 aaKnown RBP19.15■□□□□ 0.66
VPS53-210ENST00000571456 DIO3P55073 304 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 LRRC74AQ0VAA2 488 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 Q0VFX4 171 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 FUT7Q11130 342 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 LSM12Q3MHD2 195 aaKnown RBP19.15■□□□□ 0.66
VPS53-210ENST00000571456 PDCD4Q53EL6 469 aaKnown RBP19.15■□□□□ 0.66
VPS53-210ENST00000571456 METTL21CQ5VZV1 264 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 MMP21Q8N119 569 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 ARMC10Q8N2F6 343 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 OR5L2Q8NGL0 311 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 UCN3Q969E3 161 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 NCLNQ969V3 563 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 COQ8BQ96D53 544 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 SENP5Q96HI0 755 aaPredicted RBP19.15■□□□□ 0.66
VPS53-210ENST00000571456 ZNF354BQ96LW1 612 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 LMF1Q96S06 567 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 MESP1Q9BRJ9 268 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 DEFB126Q9BYW3 111 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 BHLHE41Q9C0J9 482 aaPredicted RBP19.15■□□□□ 0.66
VPS53-210ENST00000571456 SH3BP4Q9P0V3 963 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 ZNF451Q9Y4E5 1061 aa19.15■□□□□ 0.66
VPS53-210ENST00000571456 WASHC1A8K0Z3 465 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 AKAP10O43572 662 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 IGKV3-11P04433 115 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 FRKP42685 505 aaPredicted RBP19.14■□□□□ 0.65
VPS53-210ENST00000571456 STX1BP61266 288 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 PRICKLE4Q2TBC4 344 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 C1QL3Q5VWW1 255 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 ISLR2Q6UXK2 745 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 HSDL2Q6YN16 418 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 VWA5B2Q8N398 1253 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 VPS37AQ8NEZ2 397 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 FDCSPQ8NFU4 85 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 OR8J2Q8NGG1 315 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 CLHC1Q8NHS4 586 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 GFM2Q969S9 779 aaKnown RBP19.14■□□□□ 0.65
VPS53-210ENST00000571456 CTHRC1Q96CG8 243 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 CHMP6Q96FZ7 201 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 ZNF317Q96PQ6 595 aaPredicted RBP19.14■□□□□ 0.65
VPS53-210ENST00000571456 OR52B2Q96RD2 323 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 ZBTB18Q99592 522 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 OR8D2Q9GZM6 311 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 NSRP1Q9H0G5 558 aaKnown RBP19.14■□□□□ 0.65
VPS53-210ENST00000571456 NPHS2Q9NP85 383 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 SDR39U1Q9NRG7 319 aaPredicted RBP19.14■□□□□ 0.65
VPS53-210ENST00000571456 FGFR1OP2Q9NVK5 253 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 ZIM2Q9NZV7 527 aa19.14■□□□□ 0.65
VPS53-210ENST00000571456 ABI3Q9P2A4 366 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms