RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 IL17RDQ8NFM7 739 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 WDR36Q8NI36 951 aaKnown RBP8.29□□□□□ -1.08
LINC00558-201ENST00000569422 DYNC2LI1Q8TCX1 351 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 SLC38A4Q969I6 547 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 RGMAQ96B86 450 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 NECTIN3Q9NQS3 549 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 SPEGQ15772 3267 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 A0A1W2PPV9 198 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 HMGN4O00479 90 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 ARHGAP33O14559 1287 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 NARSO43776 548 aaKnown RBP8.29□□□□□ -1.08
LINC00558-201ENST00000569422 SEMA7AO75326 666 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 NTN1O95631 604 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 RPN2P04844 631 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 CDK1P06493 297 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 ADORA3P0DMS8 318 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 RHCEP18577 417 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 CXCR2P25025 360 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 HNRNPFP52597 415 aaKnown RBP8.29□□□□□ -1.08
LINC00558-201ENST00000569422 CSNK1G2P78368 415 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 SLC13A2Q13183 592 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 E2F2Q14209 437 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 EIF4HQ15056 248 aaKnown RBP8.29□□□□□ -1.08
LINC00558-201ENST00000569422 DCST1Q5T197 706 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 ZNF765Q7L2R6 523 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 OR5P2Q8WZ92 322 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 HTRA1Q92743 480 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 ZBED6CLQ96FA7 236 aaPredicted RBP8.29□□□□□ -1.08
LINC00558-201ENST00000569422 ZPBPQ9BS86 351 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 MVB12BQ9H7P6 319 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 FBXL12Q9NXK8 326 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 TVP23BQ9NYZ1 205 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 ZNF229Q9UJW7 825 aa8.29□□□□□ -1.08
LINC00558-201ENST00000569422 IGKV1-8A0A0C4DH67 115 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 ISM1B1AKI9 464 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 KMOO15229 486 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 TBX1O43435 398 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 CBFA2T3O75081 653 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 CNOT3O75175 753 aaKnown RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 ENTPD6O75354 484 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 DNAJB5O75953 348 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 PBX2P40425 430 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 CRISP1P54107 249 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 PCBP3P57721 371 aaKnown RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 CLDN2P57739 230 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 HOXC5Q00444 222 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 PCDH1Q08174 1060 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 SLAMF1Q13291 335 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 TSTQ16762 297 aaKnown RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 GPAT3Q53EU6 434 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 C9orf50Q5SZB4 431 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 TMEM164Q5U3C3 297 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 AGBL4Q5VU57 503 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 C18orf63Q68DL7 685 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 FRMPD2BQ6IN97 320 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 TCTN3Q6NUS6 607 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 KIAA1211LQ6NV74 962 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 ZNF793Q6ZN11 406 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 UBE3DQ7Z6J8 389 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 COMTD1Q86VU5 262 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 SLC34A3Q8N130 599 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 DEPDC4Q8N2C3 294 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 SP7Q8TDD2 431 aaPredicted RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 HERVK_113Q902F9 699 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 C16orf58Q96GQ5 468 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 COX14Q96I36 57 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 TREX2Q9BQ50 279 aaPredicted RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 MKRN2Q9H000 416 aaKnown RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 GLIPR2Q9H4G4 154 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 SPHK1Q9NYA1 384 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 CDV3Q9UKY7 258 aaKnown RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 ZFR2Q9UPR6 939 aaKnown RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 TRPM6Q9BX84 2022 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 LOC105371267A0A1B0GV96 52 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 A0A1W2PQU0 124 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 SULT1C4O75897 302 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 MFN2O95140 757 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 CDH3P22223 829 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 GTF2E2P29084 291 aaKnown RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 BCAP31P51572 246 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 OR4C11Q6IEV9 310 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 FBXO46Q6PJ61 603 aaPredicted RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 TMEM107Q6UX40 140 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 FBXL6Q8N531 539 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 TCEANCQ8N8B7 351 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 OR4E2Q8NGC2 313 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 MTERF3Q96E29 417 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 NEURL3Q96EH8 262 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 PDXPQ96GD0 296 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 SLC35G5Q96KT7 338 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 CAMK1GQ96NX5 476 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 KCNS3Q9BQ31 491 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 TPK1Q9H3S4 243 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 MRPS30Q9NP92 439 aaKnown RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 SIRT3Q9NTG7 399 aaPredicted RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 DPP7Q9UHL4 492 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 CAB39Q9Y376 341 aaPredicted RBP8.28□□□□□ -1.08
LINC00558-201ENST00000569422 PRAMEF27A3QJZ7 478 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 SMIM30A4D0T7 59 aa8.28□□□□□ -1.08
LINC00558-201ENST00000569422 C4orf51C9J302 202 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms