RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CHFRQ96EP1 664 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 ELMOD3Q96FG2 381 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 AMDHD1Q96NU7 426 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 HBEGFQ99075 208 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 POLR1EQ9GZS1 481 aaKnown RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 OPA3Q9H6K4 179 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 KCNK12Q9HB15 430 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 SEBOXQ9HB31 216 aaPredicted RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 PRDM5Q9NQX1 630 aaPredicted RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 OR6C2Q9NZP2 312 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 LHX6Q9UPM6 363 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 TRPV2Q9Y5S1 764 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 NEMP2A6NFY4 417 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 L7N2F9 121 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 CTSHP09668 335 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 CBSLP0DN79 551 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 CBSP35520 551 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 CACNB2Q08289 660 aaPredicted RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 TSTQ16762 297 aaKnown RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 AFMIDQ63HM1 303 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 FSTL4Q6MZW2 842 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 HACD2Q6Y1H2 254 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 SCD5Q86SK9 330 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 RTN4RL1Q86UN2 441 aaPredicted RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 LRRTM4Q86VH4 590 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 SLC41A1Q8IVJ1 513 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 TMEM86AQ8N2M4 240 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 CCDC74BQ96LY2 380 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 OR12D3Q9UGF7 316 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 MYO1GB0I1T2 1018 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 ARNTLO00327 626 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 SSNA1O43805 119 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 SMPD2O60906 423 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 ZNF25P17030 456 aaPredicted RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 C4BPBP20851 252 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 MMP12P39900 470 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 C1QTNF8P60827 252 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 ZSWIM7Q19AV6 140 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 LIPJQ5W064 366 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 C8orf82Q6P1X6 216 aaPredicted RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 RNF130Q86XS8 419 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 ZNF683Q8IZ20 524 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 PUSL1Q8N0Z8 303 aaKnown RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 CPEB3Q8NE35 698 aaKnown RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 BPIFCQ8NFQ6 507 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 BEST4Q8NFU0 473 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 PARD6GQ9BYG4 376 aaPredicted RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 TKTL2Q9H0I9 626 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 CRISPLD1Q9H336 500 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 DDIT4Q9NX09 232 aa10.31□□□□□ -0.76
CLK3-226ENST00000569406 PRRC2BQ5JSZ5 2229 aaKnown RBP10.31□□□□□ -0.76
CLK3-226ENST00000569406 TARM1B6A8C7 271 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 KPNA3O00505 521 aaPredicted RBP10.3□□□□□ -0.76
CLK3-226ENST00000569406 NQO2P16083 231 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 NPR2P20594 1047 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 SDHBP21912 280 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 CRABP1P29762 137 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 GKP32189 559 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 LHX1P48742 406 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 OR4D2P58180 307 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 MAT1AQ00266 395 aaKnown RBP10.3□□□□□ -0.76
CLK3-226ENST00000569406 ELP6Q0PNE2 266 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 ECH1Q13011 328 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 ILKQ13418 452 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 MICBQ29980 383 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 RABEPKQ7Z6M1 372 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 CYP4Z1Q86W10 505 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 TEX19Q8NA77 164 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 KCNJ9Q92806 393 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 LRIG1Q96JA1 1093 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 RBBP8Q99708 897 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 IFT27Q9BW83 186 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 NCOR1P1Q9H4R4 102 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 C11orf16Q9NQ32 467 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 UXTQ9UBK9 157 aaPredicted RBP10.3□□□□□ -0.76
CLK3-226ENST00000569406 PADI3Q9ULW8 664 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 SLC22A14Q9Y267 594 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 POFUT2Q9Y2G5 429 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 PLEKHA6Q9Y2H5 1048 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 CASP8AP2Q9UKL3 1982 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 C5orf52A6NGY3 159 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 AKR1A1P14550 325 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 ANXA7P20073 488 aaKnown RBP10.3□□□□□ -0.76
CLK3-226ENST00000569406 CD52P31358 61 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 GALNSP34059 522 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 AKR1C2P52895 323 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 AKR1C1Q04828 323 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 CAMK2DQ13557 499 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 OR8G1Q15617 311 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 SLC29A4Q7RTT9 530 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 HASPINQ8TF76 798 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 HDHD2Q9H0R4 259 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 BEX1Q9HBH7 125 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 DNAJB9Q9UBS3 223 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 GIMAP2Q9UG22 337 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 UTS2RQ9UKP6 389 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 MIA3Q5JRA6 1907 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 MAFKO60675 156 aa10.3□□□□□ -0.76
CLK3-226ENST00000569406 GATBO75879 557 aaKnown RBP10.3□□□□□ -0.76
CLK3-226ENST00000569406 ALDOBP05062 364 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms