RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SFSWAPQ12872 951 aaKnown RBP19.1■□□□□ 0.65
CLN3-230ENST00000568076 CCINQ13939 588 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 FCRL6Q6DN72 434 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 FRMPD2BQ6IN97 320 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 SLC22A18ASQ8N1D0 253 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 NINQ8N4C6 2090 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 OR56A1Q8NGH5 318 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 BBS10Q8TAM1 723 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 MIPOL1Q8TD10 442 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 HMGB4Q8WW32 186 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 PATE1Q8WXA2 126 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 KLHL6Q8WZ60 621 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 TM4SF19Q96DZ7 209 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 TRNAU1APQ9NX07 287 aaKnown RBP19.1■□□□□ 0.65
CLN3-230ENST00000568076 LYARQ9NX58 379 aaKnown RBP19.1■□□□□ 0.65
CLN3-230ENST00000568076 REV1Q9UBZ9 1251 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 MMP17Q9ULZ9 603 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 A4GNTQ9UNA3 340 aa19.1■□□□□ 0.65
CLN3-230ENST00000568076 TNFSF14O43557 240 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 ADAP00813 363 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 H1F0P07305 194 aaKnown RBP19.09■□□□□ 0.65
CLN3-230ENST00000568076 POLR2CP19387 275 aaPredicted RBP19.09■□□□□ 0.65
CLN3-230ENST00000568076 MPIP34949 423 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 CTSKP43235 329 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 MAGEA8P43361 318 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 YPEL5P62699 121 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 TEKQ02763 1124 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 PIN1Q13526 163 aaPredicted RBP19.09■□□□□ 0.65
CLN3-230ENST00000568076 COL9A2Q14055 689 aaPredicted RBP19.09■□□□□ 0.65
CLN3-230ENST00000568076 LTB4RQ15722 352 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 DCST1Q5T197 706 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 UBE2UQ5VVX9 321 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 BHLHB9Q6PI77 547 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 KRT73Q86Y46 540 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 OR13H1Q8NG92 308 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 ELP4Q96EB1 424 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 C6orf106Q9H6K1 298 aaPredicted RBP19.09■□□□□ 0.65
CLN3-230ENST00000568076 TMCC3Q9ULS5 477 aa19.09■□□□□ 0.65
CLN3-230ENST00000568076 OR6C74A6NCV1 312 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 DNAJB6O75190 326 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 NME6O75414 186 aaPredicted RBP19.08■□□□□ 0.65
CLN3-230ENST00000568076 NR2F6P10588 404 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 MAN2A2P49641 1150 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 ST13P50502 369 aaKnown RBP19.08■□□□□ 0.65
CLN3-230ENST00000568076 RGS1Q08116 209 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 TGM3Q08188 693 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 P2RY8Q86VZ1 359 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 SFTPA2Q8IWL1 248 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 FRMD1Q8N878 549 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 OR10G6Q8NH81 332 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 SLC7A13Q8TCU3 470 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 MOAP1Q96BY2 351 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 KLHL25Q9H0H3 589 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 TCEAL2Q9H3H9 227 aaPredicted RBP19.08■□□□□ 0.65
CLN3-230ENST00000568076 IMPAD1Q9NX62 359 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 GPR83Q9NYM4 423 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 DUSP12Q9UNI6 340 aa19.08■□□□□ 0.65
CLN3-230ENST00000568076 FANCMQ8IYD8 2048 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 LRP4O75096 1905 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 A0A0J9YVX5 310 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 FAAHO00519 579 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 EMC8O43402 210 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 SEMA4FO95754 770 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 CDK1P06493 297 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 IGFBP1P08833 259 aaPredicted RBP19.08■□□□□ 0.64
CLN3-230ENST00000568076 SMIM10L1P0DMW3 83 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 TGFBR2P37173 567 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 FLCNQ8NFG4 579 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 NUP43Q8NFH3 380 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 KAT2AQ92830 837 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 SMIM10Q96HG1 83 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 OR7D2Q96RA2 312 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 BCL7BQ9BQE9 202 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 UCK2Q9BZX2 261 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 QRSL1Q9H0R6 528 aaKnown RBP19.08■□□□□ 0.64
CLN3-230ENST00000568076 EQTNQ9NQ60 294 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 ACTR10Q9NZ32 417 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 KCMF1Q9P0J7 381 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 ENOPH1Q9UHY7 261 aa19.08■□□□□ 0.64
CLN3-230ENST00000568076 GIMAP1-GIMAP5A0A087WTJ2 511 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 GSAPA4D1B5 854 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 OR10H3O60404 316 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 CLPXO76031 633 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 OXSR1O95747 527 aaPredicted RBP19.07■□□□□ 0.64
CLN3-230ENST00000568076 IGHV4-34P06331 123 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 SLC35G6P0C7Q6 338 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 CNR2P34972 360 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 CDC42P60953 191 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 LSM3P62310 102 aaKnown RBP19.07■□□□□ 0.64
CLN3-230ENST00000568076 PRR5P85299 388 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 MOGQ16653 247 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 ANKDD1AQ495B1 522 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 PGBD2Q6P3X8 592 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 OR6T1Q8NGN1 323 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 NDNFQ8TB73 568 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 ZCCHC10Q8TBK6 192 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 MYDGFQ969H8 173 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 GIMAP5Q96F15 307 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 ZNF576Q9H609 170 aa19.07■□□□□ 0.64
CLN3-230ENST00000568076 TMEM74BQ9NUR3 256 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms