RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ZNF462Q96JM2 2506 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 SPENQ96T58 3664 aaKnown RBP18.13■□□□□ 0.49
CLN3-225ENST00000566824 ANKRD28O15084 1053 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 DPM1O60762 260 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 VPS4BO75351 444 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 CD96P40200 585 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 NCBP2P52298 156 aaKnown RBP eCLIP18.13■□□□□ 0.49
CLN3-225ENST00000566824 NME5P56597 212 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 TUBA3CQ13748 450 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 FHL5Q5TD97 284 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 OGFOD2Q6N063 350 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 TUBA3EQ6PEY2 450 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 RNF111Q6ZNA4 994 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 ZNF227Q86WZ6 799 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 ZADH2Q8N4Q0 377 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 OR7G2Q8NG99 324 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 HAS2Q92819 552 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 TEX37Q96LM6 180 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 SIGLEC12Q96PQ1 595 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 OR10A5Q9H207 317 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 GIMAP4Q9NUV9 329 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 COPS7AQ9UBW8 275 aa18.13■□□□□ 0.49
CLN3-225ENST00000566824 PDPK1O15530 556 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 DYRK3O43781 588 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 KLHL41O60662 606 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 EDF1O60869 148 aaKnown RBP18.12■□□□□ 0.49
CLN3-225ENST00000566824 DIAPH2O60879 1101 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 ITGA10O75578 1167 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 OR2J2O76002 312 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 IDH3AP50213 366 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 CLDN8P56748 225 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 ARG2P78540 354 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 KLRB1Q12918 225 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 MAD2L1Q13257 205 aaPredicted RBP18.12■□□□□ 0.49
CLN3-225ENST00000566824 EBPQ15125 230 aaKnown RBP18.12■□□□□ 0.49
CLN3-225ENST00000566824 NXNQ6DKJ4 435 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 Q6ZS92 163 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 FAM9CQ8IZT9 166 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 ARFGAP2Q8N6H7 521 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 TEX19Q8NA77 164 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 ZNF675Q8TD23 568 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 ACTRT2Q8TDY3 377 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 ZNF764Q96H86 408 aaPredicted RBP18.12■□□□□ 0.49
CLN3-225ENST00000566824 ART5Q96L15 291 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 AIG1Q9NVV5 245 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 MYOTQ9UBF9 498 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 TEKT2Q9UIF3 430 aa18.12■□□□□ 0.49
CLN3-225ENST00000566824 C9JVG2 144 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 NADKO95544 446 aaPredicted RBP18.11■□□□□ 0.49
CLN3-225ENST00000566824 MPIP34949 423 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 HPCAL1P37235 193 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 FRKP42685 505 aaPredicted RBP18.11■□□□□ 0.49
CLN3-225ENST00000566824 TNFSF10P50591 281 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 AQP5P55064 265 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 LSM12Q3MHD2 195 aaKnown RBP18.11■□□□□ 0.49
CLN3-225ENST00000566824 TMEM107Q6UX40 140 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 LRRC34Q8IZ02 419 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 LGI4Q8N135 537 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 ZNF441Q8N8Z8 693 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 OR52R1Q8NGF1 315 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 OR8K3Q8NH51 312 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 C16orf52Q8NHV5 167 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 RFWD2Q8NHY2 731 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 COQ8BQ96D53 544 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 MTERF3Q96E29 417 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 GAL3ST4Q96RP7 486 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 HES7Q9BYE0 225 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 WWTR1Q9GZV5 400 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 RNF32Q9H0A6 362 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 BCAP29Q9UHQ4 241 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 GPR45Q9Y5Y3 372 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 EXPH5Q8NEV8 1989 aa18.11■□□□□ 0.49
CLN3-225ENST00000566824 OR5H15A6NDH6 313 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 PRPS1L1P21108 318 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 IL12AP29459 219 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 NTSP30990 170 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 MC3RP41968 323 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 EMDP50402 254 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 CDK9P50750 372 aaKnown RBP18.1■□□□□ 0.49
CLN3-225ENST00000566824 C21orf58P58505 322 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 UFM1P61960 85 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 PHC1P78364 1004 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 HSPB3Q12988 150 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 PRR30Q53SZ7 412 aaPredicted RBP18.1■□□□□ 0.49
CLN3-225ENST00000566824 SPINK14Q6IE38 97 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 TMEM64Q6YI46 380 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 SPATA19Q7Z5L4 167 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 HPS6Q86YV9 775 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 SAMD14Q8IZD0 417 aaPredicted RBP18.1■□□□□ 0.49
CLN3-225ENST00000566824 MDS2Q8NDY4 140 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 OR7G1Q8NGA0 311 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 TM9SF4Q92544 642 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 ADIPOR1Q96A54 375 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 RASL10BQ96S79 203 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 B3GNT3Q9Y2A9 372 aa18.1■□□□□ 0.49
CLN3-225ENST00000566824 DYTNA2CJ06 578 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 NEURL1O76050 574 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 SORBS2O94875 1100 aaKnown RBP18.09■□□□□ 0.49
CLN3-225ENST00000566824 OR6B1O95007 311 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 GPX3P22352 226 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms