RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 PHYHIPQ92561 330 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 ZNF689Q96CS4 500 aaPredicted RBP3.84□□□□□ -1.8
LINC00560-201ENST00000564593 SAMD8Q96LT4 415 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 ZNF597Q96LX8 424 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 DEFB118Q96PH6 123 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 ATF6BQ99941 703 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 CABLES2Q9BTV7 478 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 OCR1Q9BZK8 76 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 LIME1Q9H400 295 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 TUBB1Q9H4B7 451 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 CTSZQ9UBR2 303 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 PLEKHA6Q9Y2H5 1048 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 MOB4Q9Y3A3 225 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 PRSS21Q9Y6M0 314 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 TONSLQ96HA7 1378 aa3.84□□□□□ -1.8
LINC00560-201ENST00000564593 TCOF1Q13428 1488 aaKnown RBP3.83□□□□□ -1.8
LINC00560-201ENST00000564593 NCOA2Q15596 1464 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 UBE4BO95155 1302 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 ARHGEF11O15085 1522 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 KIAA0556O60303 1618 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 RAPGEF6Q8TEU7 1601 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 ADCY10Q96PN6 1610 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 IGHV3OR16-10A0A075B7F0 116 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 RASGRF2O14827 1237 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 PTMSP20962 102 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 RPA1P27694 616 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 NPY2RP49146 381 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 NDST1P52848 882 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 CD300CQ08708 224 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 SMC1AQ14683 1233 aaKnown RBP3.83□□□□□ -1.8
LINC00560-201ENST00000564593 KARSQ15046 597 aaKnown RBP3.83□□□□□ -1.8
LINC00560-201ENST00000564593 FCN2Q15485 313 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 HKDC1Q2TB90 917 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 POM121L1PQ3SYA9 428 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 AGKQ53H12 422 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 TCHHL1Q5QJ38 904 aaPredicted RBP3.83□□□□□ -1.8
LINC00560-201ENST00000564593 CWC27Q6UX04 472 aaKnown RBP3.83□□□□□ -1.8
LINC00560-201ENST00000564593 OLFM4Q6UX06 510 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 METTL7BQ6UX53 244 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 RBM43Q6ZSC3 357 aaKnown RBP3.83□□□□□ -1.8
LINC00560-201ENST00000564593 TMEM26Q6ZUK4 368 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 NUFIP2Q7Z417 695 aaKnown RBP3.83□□□□□ -1.8
LINC00560-201ENST00000564593 GPR142Q7Z601 462 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 RPAINQ86UA6 219 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 ZNF440Q8IYI8 595 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 ZNRF1Q8ND25 227 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 CNNM3Q8NE01 707 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 CAPNS2Q96L46 248 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 ACCSQ96QU6 501 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 GFRA4Q9GZZ7 299 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 PANK3Q9H999 370 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 CNOT2Q9NZN8 540 aaKnown RBP3.83□□□□□ -1.8
LINC00560-201ENST00000564593 LHX3Q9UBR4 397 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 TUBGCP4Q9UGJ1 667 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 RARRES3Q9UL19 164 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 MGAT4AQ9UM21 535 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 FBXO7Q9Y3I1 522 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 MAGI1Q96QZ7 1491 aaPredicted RBP3.83□□□□□ -1.8
LINC00560-201ENST00000564593 CROCC2H7BZ55 1655 aa3.83□□□□□ -1.8
LINC00560-201ENST00000564593 SALL1Q9NSC2 1324 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 PTPRUQ92729 1446 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 DNMT1P26358 1616 aaKnown RBP3.82□□□□□ -1.8
LINC00560-201ENST00000564593 CYSRT1A8MQ03 144 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 FRAT2O75474 233 aaPredicted RBP3.82□□□□□ -1.8
LINC00560-201ENST00000564593 OR9G9P0C7N8 305 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 GHRP10912 638 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 ARF4P18085 180 aaPredicted RBP3.82□□□□□ -1.8
LINC00560-201ENST00000564593 TMOD1P28289 359 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 SLC26A5P58743 744 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 GMFBP60983 142 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 MS4A2Q01362 244 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 PAX8Q06710 450 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 ITPK1Q13572 414 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 SIX1Q15475 284 aaPredicted RBP3.82□□□□□ -1.8
LINC00560-201ENST00000564593 HAGHQ16775 308 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 IL23RQ5VWK5 629 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 LIPKQ5VXJ0 399 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 RHBDD2Q6NTF9 364 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 ISLR2Q6UXK2 745 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 STXBP4Q6ZWJ1 553 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 CCDC71Q8IV32 467 aaPredicted RBP3.82□□□□□ -1.8
LINC00560-201ENST00000564593 LMNTD2Q8IXW0 634 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 SAMD12Q8N8I0 201 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 MLKLQ8NB16 471 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 ANKRD20A12PQ8NF67 263 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 KCNK16Q96T55 309 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 NLNQ9BYT8 704 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 LRRCC1Q9C099 1032 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 RAB17Q9H0T7 212 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 FAM124BQ9H5Z6 455 aaPredicted RBP3.82□□□□□ -1.8
LINC00560-201ENST00000564593 TMEM231Q9H6L2 316 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 GTSE1Q9NYZ3 720 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 MIOXQ9UGB7 285 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 ZNF346Q9UL40 294 aaKnown RBP3.82□□□□□ -1.8
LINC00560-201ENST00000564593 ZNF175Q9Y473 711 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 CLCA3PQ9Y6N3 262 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 EPRSP07814 1512 aaKnown RBP3.82□□□□□ -1.8
LINC00560-201ENST00000564593 ZMYM6O95789 1325 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 AFF2P51816 1311 aa3.82□□□□□ -1.8
LINC00560-201ENST00000564593 EIF4G3O43432 1585 aaKnown RBP3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms