RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 RAB30Q15771 203 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 TAZQ16635 292 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 PDK4Q16654 411 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 GUK1Q16774 197 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 ME3Q16798 604 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 ACER2Q5QJU3 275 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 CELF3Q5SZQ8 465 aaKnown RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 GPR157Q5UAW9 335 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 SEL1L3Q68CR1 1132 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 VSTM1Q6UX27 236 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 LRRN1Q6UXK5 716 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 DCDC5Q6ZRR9 648 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 ZBTB49Q6ZSB9 765 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 SLC35D2Q76EJ3 337 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 EIF3MQ7L2H7 374 aaKnown RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 GDPD3Q7L5L3 318 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 LUZP2Q86TE4 346 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 RTN4RL2Q86UN3 420 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 NT5DC3Q86UY8 548 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 AACSQ86V21 672 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 RBM45Q8IUH3 476 aaKnown RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 CCDC60Q8IWA6 550 aaPredicted RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 FAM89BQ8N5H3 189 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 C12orf76Q8N812 135 aaPredicted RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 PNPLA1Q8N8W4 532 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 OR4K14Q8NGD5 310 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 OR9K2Q8NGE7 335 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 RAET1EQ8TD07 263 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 MRGPRDQ8TDS7 321 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 CSGALNACT1Q8TDX6 532 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 NEK7Q8TDX7 302 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 GPX8Q8TED1 209 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 SLC22A17Q8WUG5 538 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 DNAJC9Q8WXX5 260 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 AP3S1Q92572 193 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 P2RX5Q93086 422 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 EXOSC8Q96B26 276 aaKnown RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 TESCQ96BS2 214 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 ELP4Q96EB1 424 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 BSCL2Q96G97 398 aaPredicted RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 C10orf90Q96M02 699 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 PACRGQ96M98 296 aaPredicted RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 SERPINB11Q96P15 392 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 SLITRK1Q96PX8 696 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 BTBD9Q96Q07 612 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 PANX1Q96RD7 426 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 C2orf88Q9BSF0 95 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 ZNF2Q9BSG1 426 aaPredicted RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 NAT9Q9BTE0 207 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 ASB7Q9H672 318 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 RANBP3Q9H6Z4 567 aaPredicted RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 KAT14Q9H8E8 782 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 CHODLQ9H9P2 273 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 PRDM8Q9NQV8 689 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 GCNT4Q9P109 453 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 MYEF2Q9P2K5 600 aaKnown RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 ABCD2Q9UBJ2 740 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 OSGIN1Q9UJX0 560 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 RAB21Q9UL25 225 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 B3GNT3Q9Y2A9 372 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 NUBP2Q9Y5Y2 271 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 POLA1P09884 1462 aaPredicted RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 WRNQ14191 1432 aaPredicted RBP eCLIP4.8□□□□□ -1.64
VPS35-205ENST00000563984 RIMS1Q86UR5 1692 aaKnown RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 RTL1A6NKG5 1358 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 KDM6BO15054 1643 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 TOPBP1Q92547 1522 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 TRAV25A0A0B4J276 109 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 A0A1B0GUH1 482 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 SLC5A10A0PJK1 596 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 VPS37CA5D8V6 355 aaPredicted RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 CLCA1A8K7I4 914 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 ZNF487B1APH4 448 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 PRAMEF26H0Y7S4 382 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 M0QZ92 97 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 CTDSP2O14595 271 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 SURF4O15260 269 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 ASNA1O43681 348 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 DFNA5O60443 496 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 PRAMEF11O60813 436 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 GLRA3O75311 464 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 SEC24AO95486 1093 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 ANGPTL1O95841 491 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 IFNA10P01566 189 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 UGT2B4P06133 528 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 LYNP07948 512 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 HMBSP08397 361 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 HCKP08631 526 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 ANXA4P09525 319 aaPredicted RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 TRIM49P0CI25 452 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 TRIM49CP0CI26 452 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 HSPD1P10809 573 aaKnown RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 NR2C1P13056 603 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 CYP4B1P13584 511 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 DAOP14920 347 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 ZNF7P17097 686 aaPredicted RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 IGFBP5P24593 272 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 ACP1P24666 158 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 DNASE1P24855 282 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 BSGP35613 385 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms