RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 PTGFRNQ9P2B2 879 aa20.15■□□□□ 0.82
SNX1-206ENST00000559389 TRIM33Q9UPN9 1127 aa20.15■□□□□ 0.82
SNX1-206ENST00000559389 DOCK10Q96BY6 2186 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 OR6C76A6NM76 312 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 ZFAND5O76080 213 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 ALPPP05187 535 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 EFNA1P20827 205 aaPredicted RBP20.14■□□□□ 0.81
SNX1-206ENST00000559389 DRD4P21917 467 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 GPX3P22352 226 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 MC3RP41968 323 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 WNT3P56703 355 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 SRSF11Q05519 484 aaKnown RBP20.14■□□□□ 0.81
SNX1-206ENST00000559389 SF3A3Q12874 501 aaKnown RBP eCLIP20.14■□□□□ 0.81
SNX1-206ENST00000559389 DUSP8Q13202 625 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 PGS1Q32NB8 556 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 FAM174BQ3ZCQ3 159 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 TRMT12Q53H54 448 aaKnown RBP20.14■□□□□ 0.81
SNX1-206ENST00000559389 FHL5Q5TD97 284 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 AGAP7PQ5VUJ5 663 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 OR4F3Q6IEY1 312 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 ZNF615Q8N8J6 731 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 OR7G2Q8NG99 324 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 OR9I1Q8NGQ6 314 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 KAT2AQ92830 837 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 ABHD17AQ96GS6 310 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 AGAP4Q96P64 663 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 ZBTB18Q99592 522 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 NPAS2Q99743 824 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 ZZEF1O43149 2961 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 CROCCQ5TZA2 2017 aa20.14■□□□□ 0.81
SNX1-206ENST00000559389 A0A087WV62 115 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 A0A1W2PRB8 838 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 GMNCA6NCL1 334 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 PLOD2O00469 737 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 PLOD3O60568 738 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 SLC22A3O75751 556 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 ZFP36L2P47974 494 aaKnown RBP20.13■□□□□ 0.81
SNX1-206ENST00000559389 CDK9P50750 372 aaKnown RBP20.13■□□□□ 0.81
SNX1-206ENST00000559389 MANFP55145 182 aaKnown RBP20.13■□□□□ 0.81
SNX1-206ENST00000559389 RNF4P78317 190 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 MFAP5Q13361 173 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 SQLEQ14534 574 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 EXOSC7Q15024 291 aaKnown RBP20.13■□□□□ 0.81
SNX1-206ENST00000559389 EBPQ15125 230 aaKnown RBP20.13■□□□□ 0.81
SNX1-206ENST00000559389 METTL21CQ5VZV1 264 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 FCRLBQ6BAA4 426 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 TCTN3Q6NUS6 607 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 TMEM107Q6UX40 140 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 ISLR2Q6UXK2 745 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 EXD3Q8N9H8 876 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 SIMC1Q8NDZ2 872 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 C9orf43Q8TAL5 461 aaPredicted RBP20.13■□□□□ 0.81
SNX1-206ENST00000559389 NUBPLQ8TB37 319 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 WBP1Q96G27 269 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 OR10A5Q9H207 317 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 SIRT3Q9NTG7 399 aaPredicted RBP20.13■□□□□ 0.81
SNX1-206ENST00000559389 PCDHGB7Q9Y5F8 929 aa20.13■□□□□ 0.81
SNX1-206ENST00000559389 TMEM200CA6NKL6 621 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 A8MUI8 341 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 RNASET2O00584 256 aaKnown RBP20.12■□□□□ 0.81
SNX1-206ENST00000559389 MAN1A2O60476 641 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 PRAMEF2O60811 474 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 SCN2BO60939 215 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 C6orf47O95873 294 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 PDGFAP04085 211 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 S100A3P33764 101 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 GPC1P35052 558 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 PHC1P78364 1004 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 PAOXQ6QHF9 649 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 SPATA21Q7Z572 469 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 OR2L13Q8N349 312 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 OR52R1Q8NGF1 315 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 OR5P2Q8WZ92 322 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 ELP4Q96EB1 424 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 ZNF354BQ96LW1 612 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 UBL7Q96S82 380 aaPredicted RBP20.12■□□□□ 0.81
SNX1-206ENST00000559389 ANKRA2Q9H9E1 313 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 NEUROD4Q9HD90 331 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 FAM120CQ9NX05 1096 aaKnown RBP20.12■□□□□ 0.81
SNX1-206ENST00000559389 TEKT2Q9UIF3 430 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 TP53TG5Q9Y2B4 290 aa20.12■□□□□ 0.81
SNX1-206ENST00000559389 K7EM74 188 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 BCAS2O75934 225 aaPredicted RBP20.11■□□□□ 0.81
SNX1-206ENST00000559389 PSMG1O95456 288 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 DGKQP52824 942 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 MLF1P58340 268 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 MEP1AQ16819 746 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 ACER2Q5QJU3 275 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 ABHD17BQ5VST6 288 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 IGFL2Q6UWQ7 119 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 SLC29A4Q7RTT9 530 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 RPS19BP1Q86WX3 136 aaKnown RBP20.11■□□□□ 0.81
SNX1-206ENST00000559389 CLECL1Q8IZS7 167 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 OR5L2Q8NGL0 311 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 C16orf52Q8NHV5 167 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 PSMA8Q8TAA3 256 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 THAP3Q8WTV1 239 aaPredicted RBP20.11■□□□□ 0.81
SNX1-206ENST00000559389 WWTR1Q9GZV5 400 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 FAM107BQ9H098 131 aa20.11■□□□□ 0.81
SNX1-206ENST00000559389 DDX18Q9NVP1 670 aaKnown RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms