RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 KITP10721 976 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 DDX5P17844 614 aaKnown RBP12.6□□□□□ -0.39
SHMT2-228ENST00000557302 PTGER1P34995 402 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 HPCAL1P37235 193 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 HLCSP50747 726 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 NCBP2P52298 156 aaKnown RBP eCLIP12.6□□□□□ -0.39
SHMT2-228ENST00000557302 TLE1Q04724 770 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 EMX2Q04743 252 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 MGAT2Q10469 447 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 OR1C1Q15619 314 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 LTB4RQ15722 352 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 PRSS53Q2L4Q9 553 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 HSP90B2PQ58FF3 399 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 ZNF628Q5EBL2 1059 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 ZNF468Q5VIY5 522 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-228ENST00000557302 FAM111BQ6SJ93 734 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 C16orf47Q6ZP98 133 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-228ENST00000557302 R3HCC1LQ7Z5L2 792 aaKnown RBP12.6□□□□□ -0.39
SHMT2-228ENST00000557302 LRRC34Q8IZ02 419 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 OR9A2Q8NGT5 310 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 ZNF675Q8TD23 568 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 CTHRC1Q96CG8 243 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 MTERF3Q96E29 417 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 C5orf34Q96MH7 638 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 RASL10BQ96S79 203 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 OR10A5Q9H207 317 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 ASIC5Q9NY37 505 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 NOP53Q9NZM5 478 aaKnown RBP12.6□□□□□ -0.39
SHMT2-228ENST00000557302 LRFN1Q9P244 771 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 BCAP29Q9UHQ4 241 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 C2orf92A0A1B0GVN3 265 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 SDHDO14521 159 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 SCAMP2O15127 329 aaKnown RBP12.59□□□□□ -0.39
SHMT2-228ENST00000557302 PDPK1O15530 556 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 TBX19O60806 448 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 CD46P15529 392 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 PCSK2P16519 638 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 LBPP18428 481 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 S1PR1P21453 382 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 RPL3P39023 403 aaKnown RBP12.59□□□□□ -0.39
SHMT2-228ENST00000557302 MLLT10P55197 1068 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 MRPS35P82673 323 aaKnown RBP12.59□□□□□ -0.39
SHMT2-228ENST00000557302 PDE7AQ13946 482 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 PTGR1Q14914 329 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 EBPQ15125 230 aaKnown RBP12.59□□□□□ -0.39
SHMT2-228ENST00000557302 INPP5JQ15735 1006 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-228ENST00000557302 MPEG1Q2M385 716 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 TRMT12Q53H54 448 aaKnown RBP12.59□□□□□ -0.39
SHMT2-228ENST00000557302 ZNF766Q5HY98 468 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 HLA-DQA1Q5Y7H0 255 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 ANKRD26P1Q6NSI1 321 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 WDR75Q8IWA0 830 aaKnown RBP12.59□□□□□ -0.39
SHMT2-228ENST00000557302 ZNF615Q8N8J6 731 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 MDS2Q8NDY4 140 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 PIWIL2Q8TC59 973 aaKnown RBP12.59□□□□□ -0.39
SHMT2-228ENST00000557302 SLC22A8Q8TCC7 542 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 CPT1CQ8TCG5 803 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 ASB15Q8WXK1 588 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 KAT2AQ92830 837 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 ERP27Q96DN0 273 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 C7orf26Q96N11 449 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 SIGLEC12Q96PQ1 595 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 WWTR1Q9GZV5 400 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 TRIM45Q9H8W5 580 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-228ENST00000557302 SH3BP4Q9P0V3 963 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 ZNF639Q9UID6 485 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 ERVK-11Q9UQG0 969 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 CFL2Q9Y281 166 aa12.59□□□□□ -0.39
SHMT2-228ENST00000557302 A8MVJ9 347 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 ATP8B1O43520 1251 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 SLC25A12O75746 678 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 BCAS2O75934 225 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-228ENST00000557302 NEURL1O76050 574 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 SLITRK5O94991 958 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 CBX7O95931 251 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 G6PDP11413 515 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 PRPS1L1P21108 318 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 SOX3P41225 446 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 EXOSC7Q15024 291 aaKnown RBP12.58□□□□□ -0.4
SHMT2-228ENST00000557302 INAQ16352 499 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 PRR30Q53SZ7 412 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-228ENST00000557302 ZNF385BQ569K4 471 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 PIGGQ5H8A4 983 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 SPINK14Q6IE38 97 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 RPUSD3Q6P087 351 aaKnown RBP12.58□□□□□ -0.4
SHMT2-228ENST00000557302 OPN5Q6U736 354 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 LARP4Q71RC2 724 aaKnown RBP eCLIP12.58□□□□□ -0.4
SHMT2-228ENST00000557302 GPALPP1Q8IXQ4 340 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 CYP4Z2PQ8N1L4 340 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 CISD2Q8N5K1 135 aaKnown RBP12.58□□□□□ -0.4
SHMT2-228ENST00000557302 OR52R1Q8NGF1 315 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 C16orf52Q8NHV5 167 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 TMEM125Q96AQ2 219 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 AMDHD1Q96NU7 426 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 GLIPR2Q9H4G4 154 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 KLHL1Q9NR64 748 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 RYDENQ9NUL5 291 aaKnown RBP12.58□□□□□ -0.4
SHMT2-228ENST00000557302 HPF1Q9NWY4 346 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 MAP10Q9P2G4 905 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 PRODH2Q9UF12 536 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms