RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SERHLQ9NQF3 203 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 ARL2BPQ9Y2Y0 163 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 CFAP47Q6ZTR5 3102 aa11.93□□□□□ -0.5
SHMT2-227ENST00000557269 TRBV11-1A0A0K0K1C0 115 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 PRSS51A0A1B0GVH4 220 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 SYNDIG1LA6NDD5 238 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 UPK1AO00322 258 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 RNASET2O00584 256 aaKnown RBP11.92□□□□□ -0.5
SHMT2-227ENST00000557269 MAN1A2O60476 641 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 IL6P05231 212 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 SERPINA7P05543 415 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 ABCB1P08183 1280 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-227ENST00000557269 CDKN2CP42773 168 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 CCL11P51671 97 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 SLC37A1P57057 533 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 IRX1P78414 480 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-227ENST00000557269 AIMP2Q13155 320 aaKnown RBP11.92□□□□□ -0.5
SHMT2-227ENST00000557269 RAPSNQ13702 412 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 MLC1Q15049 377 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 TLR1Q15399 786 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 EXT1Q16394 746 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 DPY19L1Q2PZI1 675 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 COL28A1Q2UY09 1125 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 FCRLBQ6BAA4 426 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 SLC2A7Q6PXP3 512 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 C16orf47Q6ZP98 133 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-227ENST00000557269 APLFQ8IW19 511 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-227ENST00000557269 C9orf40Q8IXQ3 194 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 KBTBD2Q8IY47 623 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 C7orf57Q8NEG2 295 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 OR52R1Q8NGF1 315 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 OR5P2Q8WZ92 322 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 EXTL1Q92935 676 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 VMP1Q96GC9 406 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 THOC3Q96J01 351 aaKnown RBP11.92□□□□□ -0.5
SHMT2-227ENST00000557269 VPS50Q96JG6 964 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 NPAS2Q99743 824 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 CCDC106Q9BWC9 280 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 LIN28AQ9H9Z2 209 aaKnown RBP11.92□□□□□ -0.5
SHMT2-227ENST00000557269 SLC6A13Q9NSD5 602 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 FAM120CQ9NX05 1096 aaKnown RBP11.92□□□□□ -0.5
SHMT2-227ENST00000557269 DTX4Q9Y2E6 619 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 ACACBO00763 2458 aa11.92□□□□□ -0.5
SHMT2-227ENST00000557269 LAMA5O15230 3695 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 ANKRD11Q6UB99 2663 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-227ENST00000557269 TMEM200CA6NKL6 621 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 PLOD2O00469 737 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 CFLARO15519 480 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 PLOD3O60568 738 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 CPSF4O95639 269 aaKnown RBP11.91□□□□□ -0.5
SHMT2-227ENST00000557269 DDX5P17844 614 aaKnown RBP11.91□□□□□ -0.5
SHMT2-227ENST00000557269 ITGA3P26006 1051 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 GPC1P35052 558 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 EMDP50402 254 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 ST13P50502 369 aaKnown RBP11.91□□□□□ -0.5
SHMT2-227ENST00000557269 RRADP55042 308 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 SOX8P57073 446 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 KCNK10P57789 538 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 PAGE3Q5JUK9 113 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 GKAP1Q5VSY0 366 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-227ENST00000557269 ANXA8L1Q5VT79 327 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 B3GNTL1Q67FW5 361 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-227ENST00000557269 TREML1Q86YW5 311 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 OR2L13Q8N349 312 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 GALNT16Q8N428 558 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 NATD1Q8N6N6 113 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 CLEC1AQ8NC01 280 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 OR4A15Q8NGL6 344 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 ZFP28Q8NHY6 868 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 PSMA8Q8TAA3 256 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 BRIX1Q8TDN6 353 aaKnown RBP11.91□□□□□ -0.5
SHMT2-227ENST00000557269 THAP3Q8WTV1 239 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-227ENST00000557269 APOBEC4Q8WW27 367 aaKnown RBP11.91□□□□□ -0.5
SHMT2-227ENST00000557269 SPDL1Q96EA4 605 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 CCDC115Q96NT0 180 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 OR10A5Q9H207 317 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 TMEM45AQ9NWC5 275 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 BCAP29Q9UHQ4 241 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 BTNL2Q9UIR0 455 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 C19orf53Q9UNZ5 99 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-227ENST00000557269 MED13Q9UHV7 2174 aa11.91□□□□□ -0.5
SHMT2-227ENST00000557269 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 A0A087WV62 115 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 CCDC154A6NI56 674 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 A8MUI8 341 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 DYRK3O43781 588 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 CCDC22O60826 627 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 CEACAM4O75871 244 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 PSMG1O95456 288 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 GSNP06396 782 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 ICAM2P13598 275 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 PTPN6P29350 595 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 MAP1BP46821 2468 aaKnown RBP11.9□□□□□ -0.5
SHMT2-227ENST00000557269 CLCN2P51788 898 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 RNF4P78317 190 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 GAB1Q13480 694 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 LINC00303Q3SY05 128 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 GTDC1Q4AE62 458 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 H3F3CQ6NXT2 135 aa11.9□□□□□ -0.5
SHMT2-227ENST00000557269 BORAQ6PGQ7 559 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms